Phenotype and GWAS Information:

Agronomic Traits

Note: All the agronomic trait is from the article Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection.

Metabolic Traits

Note: All the metabolic trait is from the article Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism. Some metabolics have two replications, the second replication is end with '_2', like 'mr1002_2'.

Search Results:

The Heading Date (day) Distribution in All Population:

Phenotype Information Table:

Note: -9 means missing value.

Cultivar Name Cultivar ID Subpopulation Heading Date (day)
Sadu-cho C001 Indica I 80
Dom_Sufid C002 VI/Aromatic 96
Gerdeh C003 Japonica Intermediate 82
Li-Jiang-Xin-Tuan-Hei-Gu_ C004 Temperate Japonica 84
AZUCENA C005 Tropical Japonica 102
Shan-Huang_Zhan-2-1_ C006 Indica Intermediate 91
Shan-Huang_Zhan-2-2_ C007 Indica Intermediate 91
Swarna C008 Indica Intermediate 143
MOROBEREKAN C009 Indica Intermediate 93
CYPRESS C010 Tropical Japonica 96
MILYANG_23 C011 Indica II 109
Tainong67 C012 Temperate Japonica 97
N_22 C013 Aus 91
M202 C014 Japonica Intermediate 78
Dular C015 Aus 89
Laoguangtou83 C016 Temperate Japonica 53
AnnongwangengB-1 C017 Temperate Japonica 50
AnnongwangengB-2 C018 Temperate Japonica 60
Aijiaonante C019 Indica I 72
Guangluai-4-1 C020 Indica I 71
xiangaizao10 C021 Indica I 71
JinnanteB C022 Indica I 70
Funingzipi C023 Temperate Japonica 73
zhenshan97B-1 C024 Indica I 74
Qingsiai16B C025 Indica Intermediate 90
Weiguo C026 Temperate Japonica 80
Dianrui409B C027 Indica Intermediate 89
Liaogeng287 C028 Temperate Japonica 81
Huhui628 C029 Japonica Intermediate 88
88B-1 C030 Indica Intermediate 92
88B-2 C031 Indica Intermediate 95
Longhuamaohu C032 Temperate Japonica 72
Lucaihao C033 Indica I 73
Zhonglouyihao1 C034 Temperate Japonica 83
Yelicanghua C035 Temperate Japonica 75
Shufeng101 C036 Indica Intermediate 85
Chengduai3hao C037 Indica I 85
Sankecui C038 Indica Intermediate 93
Gongju73 C039 Indica I 86
Jiabala C040 Indica I 88
Taishannuo C041 Indica I 91
Guichao2hao C042 Indica Intermediate 92
Huke3hao C043 Indica I 94
Teqingxuanhui C044 Indica Intermediate 93
Huangsiguizhan C045 Indica Intermediate 90
Xiangwanxian3hao C046 Indica Intermediate 91
Hanmadao-2 C047 Indica I 97
Zaoshunonghu6 C048 Temperate Japonica 89
Jinyou1hao C049 Indica Intermediate 93
Chengnongshuijing C050 Indica II 100
PeiC122 C051 Intermediate 102
Guihuahuang C052 Temperate Japonica 95
Momi C053 Indica Intermediate 110
Xiushui115 C054 Temperate Japonica 102
Sanbaili C055 Indica I 60
Jindao1hao C056 Temperate Japonica 75
Dandongludao C057 Japonica Intermediate 84
Liusha1hao C058 Indica I 87
Bawangbian1 C059 Indica I 95
Dongtingwanxian C060 Indica I 93
Yangdao2hao C061 Indica II 106
WH62 C062 Indica I 94
Geng87-304 C063 Temperate Japonica 106
Sugeng2hao C064 Temperate Japonica 109
Hongwan1hao C065 Indica Intermediate 121
Liushizao C066 Indica I 74
Muxiqiu C067 Temperate Japonica 85
Taizhongxianxuan2 C068 Indica II 93
Dangyu5hao C069 Indica II 100
Youmangzaogeng C070 Temperate Japonica 76
Laohuzhong C071 Temperate Japonica 108
Nantehao C072 Indica I 85
Esiniu C073 Indica I 89
cunsanli C074 Temperate Japonica 89
Huangkezaonian C075 Temperate Japonica 86
Benbanggu-1 C076 Indica I 90
Benbanggu-2 C077 Indica I 88
Qitoubaigu C078 Indica Intermediate 88
Muguanuo-1 C079 Temperate Japonica 85
Hanmadao-1 C080 Indica I 91
Heidu4 C081 Indica I 89
Gaoyangdiandao C082 Temperate Japonica 90
chikenuo C083 Temperate Japonica 91
Haobuka C084 Japonica Intermediate 105
Shanjiugu C085 Japonica Intermediate 91
Fanhaopi C086 Aus 100
Lixingeng C087 Temperate Japonica 104
Nangaogu-2 C088 Indica I 110
Tieganwu C089 Temperate Japonica 114
Sanlicun C090 Indica Intermediate 91
Meihuanuo-1 C091 Indica I 88
Meihuanuo-2 C092 Indica I 88
Xiangnuo-2 C093 Temperate Japonica 100
Menjiagao1 C094 Indica Intermediate 108
Xiaohonggu C095 Indica I 112
Jinxibai-1 C096 Indica Intermediate 110
Jinbaoyin C097 Indica Intermediate 114
Hongainuo C098 Indica Intermediate 114
WH099 C099 Indica Intermediate 114
WH100 C100 Indica Intermediate 101
Babaili C101 Temperate Japonica 110
Qiyuexian C102 Indica Intermediate 148
Yuyannuo-1 C103 Temperate Japonica 146
Mamagu-1 C104 Indica I 92
WH105 C105 Indica Intermediate 97
Hongkezhenuo C106 Temperate Japonica 107
Mowanggunei-2 C107 Indica III 112
Mamagu-2 C108 Indica I 83
WH109 C109 Indica I 88
Xianggu C110 Indica I 107
Ximaxian C111 Temperate Japonica 147
Jinnante43B C112 Indica I 73
Xiangzaoxian7hao C113 Indica Intermediate 60
80B C114 Indica Intermediate 61
WH115 C115 Indica II 73
LimingB C116 Temperate Japonica 85
Jiangnongzao1hao C117 Indica Intermediate 88
Gu154 C118 Indica II 96
Ninghui21 C119 Temperate Japonica 88
Shuiyuan300li C120 Temperate Japonica 73
XiangaiB C121 Indica Intermediate 91
Aituogu151 C122 Indica I 93
Taidongludao C123 Tropical Japonica 82
menjiading2 C124 Indica Intermediate 92
Jiefangxian C125 Indica I 84
Baikehualuo C127 Indica I 84
Liuyezhan C128 Indica I 86
Aihechi C129 Indica Intermediate 110
Xiangnuo-1 C130 Temperate Japonica 98
Xuanenchangtan C131 Indica I 84
Jinzhinuo C132 Indica Intermediate 104
Muguanuo-2 C133 Temperate Japonica 87
Wuzidui C134 Temperate Japonica 109
Xibaizhan C135 Indica I 92
Zegu C136 Indica I 88
Cungunuo C137 Temperate Japonica 92
Lengshuigu C138 Temperate Japonica 99
WH139 C139 Indica I 99
Wuzuhonggu C140 Indica I 111
Nangaogu-1 C141 Indica I 121
Mowanggunei-1 C142 Indica III 113
Qitougu C143 Indica I 103
Huangpinuo C144 Temperate Japonica 111
Zhenshan97B C145 Indica I 72
Nipponbare C146 Temperate Japonica 83
Minghui63 C147 Indica II 100
9311 C148 Indica II 86
Zhonghua11 C149 Temperate Japonica 78
Balilla C150 Temperate Japonica 82
Nanjing11 C151 Indica I 92
02428 C152 Temperate Japonica 94
IRAT109 C153 Tropical Japonica 89
Heigeng2hao C154 Temperate Japonica 58
Erjiunan1hao C155 Indica I 69
ChaoyangyihaoB C156 Indica I 72
L301B C157 Indica I 69
Guangluai15 C158 Indica I 73
ZhuzhenB C159 Indica I 88
Baoxie-7B C160 Indica Intermediate 75
Gzhenshan97B C161 Indica I 85
Nanxiongzaoyou C162 Indica Intermediate 59
Zaoshuxianghei C163 Indica II 89
IR661-1 C164 Indica II 85
Nanjing11-2 C165 Indica I 87
Gui630 C166 Indica Intermediate 89
76--1 C167 Indica Intermediate 94
Xugunuo C168 Indica Intermediate 92
Taizhongzailai1 C169 Indica Intermediate 97
Xiangwanxian1hao C170 Indica I 91
Xingguo C171 Temperate Japonica 89
Zhonghua8hao C172 Temperate Japonica 80
Aimakang C173 Indica I 89
JWR221 C174 Indica II 104
Zhengxian232 C175 Indica Intermediate 103
Chenwan3hao C176 Indica Intermediate 124
Maguzi C177 Temperate Japonica 78
Aimi C178 Indica I 97
Haobayong1 C179 Temperate Japonica 104
Wanlixian C180 Indica I 84
Feidongtangdao C181 Temperate Japonica 89
Hengxianliangchun C182 Indica I 88
Leihuozhan C183 Indica I 86
Baikezaohe C184 Indica I 89
Haomake(K) C185 Japonica Intermediate 108
Sanbangqishiluo C186 Japonica Intermediate 111
Niankenuo C187 Temperate Japonica 101
Yangkenuo C188 Temperate Japonica 103
Putaohuang C189 Temperate Japonica 83
Xiangdao C190 Indica I 93
Younian C191 Indica I 99
Wukezhan C192 Indica Intermediate 149
Zhongnong4hao C193 Indica I 83
Minbeiwanxian C194 Indica Intermediate 104
Hongmisandan C195 Temperate Japonica 113
Yuyannuo-2 C196 Temperate Japonica 148
Maweinian C197 Indica I 89
Zinuo C198 Indica Intermediate 91
Beizinuo C199 Indica I 104
Biwusheng C200 Indica I 110
Yizhixiang C201 Indica Intermediate 110
Xiaobaimi C202 Indica I 89
Zaoxian240 C203 Indica I 70
Mayang_Khang W001 Indica I 87
E_B_Gopher W002 Tropical Japonica 107
C_5560 W003 Tropical Japonica 96
Quinimpol W004 Tropical Japonica 106
TAICHU_MOCHI_59 W005 Tropical Japonica 109
WC_2811 W006 Tropical Japonica 104
Criollo_Chivacoa_2 W007 Tropical Japonica 105
Secano_do_Brazil W008 Tropical Japonica 105
BERLIN W009 Indica III 115
Sel._No._388 W010 Japonica Intermediate 97
SHIMIZU_MOCHI W011 Temperate Japonica 73
KRASNODARSKIJ_424 W012 Temperate Japonica 67
Pergonil_15 W013 Temperate Japonica 72
Red_Khosha_Cerma W014 VI/Aromatic 92
Safut_Khosha W015 Aus 103
NORIN_11 W016 Temperate Japonica 45
R_75 W017 Tropical Japonica 112
UZ_ROSZ_M38 W018 Temperate Japonica 60
H57-3-1 W019 Japonica Intermediate 91
IARI_6626 W020 Aus 95
Khao_Luang W021 Japonica Intermediate 105
C_8429 W022 Tropical Japonica 112
Warrangal_Culture_1252 W023 Indica III 105
Padi_Pohon_Batu W024 Tropical Japonica 107
NC_1/536 W025 Aus 101
Won_Son_Zo_No._11 W026 Indica I 92
Chacareiro_Uruguay W027 Temperate Japonica 85
Doble_Carolina W028 Aus 105
Ai_Chueh_Ta_Pai_Ku W029 Indica Intermediate 97
Thang_10 W030 Indica Intermediate 109
Sipirasikkam W031 Indica I 90
TJ W032 Indica I 88
PD_46 W033 Indica I 82
PATNAI_6 W034 Aus 99
K8C-263-3 W035 Indica Intermediate 105
Chun_118-33 W036 Indica I 105
Manga_Kely_694 W037 Indica Intermediate 110
BLUE_STICK W038 Temperate Japonica 120
Nam_Dawk_Mai W039 Indica I 91
INIAP_7 W040 Indica II 109
Onu_B W041 Tropical Japonica 95
Red W042 Indica Intermediate 112
Dichroa_Alef_Uslkij W043 Indica Intermediate 110
BKN_6987-68-14 W044 Indica II 107
KUBANETS_508 W045 Temperate Japonica 52
IR_9660-48-1-1-2 W046 Indica II 105
Jumli_dhan W047 Japonica Intermediate 97
N-2703 W048 Aus 93
PHUDUGEY W049 Aus 77
Ak_Tokhum W050 VI/Aromatic 121
RP2151-173-1-8 W051 Indica II 55
HB-6-2 W052 Temperate Japonica 103
GPNO_1106 W053 Tropical Japonica 105
Toga W054 Indica Intermediate 106
Ragasu W055 Intermediate 97
Tamanishiki W056 Temperate Japonica 110
Grassy W057 Tropical Japonica 100
Kao_Chio_Lin_Chou W058 Indica I 85
Niwahutaw_Mochi W059 Temperate Japonica 90
Somewake W060 Temperate Japonica 72
Ardito W061 Japonica Intermediate 81
NANTON_NO._131 W062 Tropical Japonica 124
Vary_Tarva_Osla W063 Japonica Intermediate 85
CSORNUJ W064 Temperate Japonica 51
R_67 W065 Tropical Japonica 92
IR_238 W066 Indica Intermediate 95
Mitak W067 Tropical Japonica 102
Gazan W068 Temperate Japonica 90
99216 W069 Aus 102
Shui_Ya_Jien W070 Indica Intermediate 99
AKP_4 W071 Indica Intermediate 53
SORNAVARI W072 Aus 114
IR_2061-214-2-3 W073 Indica II 83
TAINUNG_45 W074 Indica Intermediate 122
Sapundali_Local W075 Indica Intermediate 95
Tauli W076 Aus 94
79 W077 VI/Aromatic 110
B805D-MR-16-8-3 W078 Indica Intermediate 121
A_152 W079 Intermediate 89
UZ_ROS_59 W080 Indica I 85
Gasym_Hany W081 VI/Aromatic 87
Celiaj W082 Temperate Japonica 77
CNTLR80076-44-1-1-1 W083 Indica Intermediate 94
IR_58614-B-B-8-2 W084 Indica Intermediate 95
KECHENGNUO_NO._4 W085 Indica Intermediate 89
4484 W086 Indica II 91
YOU-I_B W087 Indica I 65
CHUNJIANGZAO_NO._1 W088 Temperate Japonica 67
Egyptian_Wild_Type W089 Indica III 85
C.B._II W090 Aus 100
Gallawa W091 Aus 103
Karayal W092 Aus 103
Srav_Prapay W093 Indica III 84
Nang_Bang_Bentre W094 Aus 89
DJ_24 W095 Aus 92
DJ_102 W096 Aus 89
Santhi_990 W097 Intermediate 88
UZ_ROS_7-13 W098 Aus 95
SL_22-620 W099 Aus 105
Spin_Mere W100 Aus 102
AMANE W101 Indica Intermediate 89
Padi_Tarab_Arab W102 Tropical Japonica 95
P_35 W103 Aus 94
CAROLINO_164 W104 Aus 91
HKG_98 W105 Aus 97
Daudzai_Field_Mix W106 Aus 107
JP_5 W107 Indica Intermediate 120
Hi_Muke W108 Aus 91
WIR_911 W109 Temperate Japonica 48
Lua_Chua_Chan W110 Tropical Japonica 128
Sereno W111 Indica III 114
ARC_10633 W112 Indica III 114
Simpor W113 Tropical Japonica 110
Heo_Trang W114 Indica III 122
THAVALU W115 Aus 116
WC_10253 W116 Tropical Japonica 99
KRASNODARSKIJ_3352 W117 Temperate Japonica 69
EMBRAPA_1200 W118 Tropical Japonica 103
WAB462-10-3-1 W119 Tropical Japonica 95
Bombilla W120 Temperate Japonica 90
TCHAMPA W121 Aus 93
BHIM_DHAN W122 Japonica Intermediate 98
WC_3532 W123 Tropical Japonica 99
Kin_Shan_Zim W124 Indica I 77
Yong_Chal_Byo W125 Intermediate 88
Pan_Ju W126 Indica I 89
Buphopa W127 Japonica Intermediate 112
TAINO_38 W128 Intermediate 111
2 W129 VI/Aromatic 94
LUSITANO W130 Temperate Japonica 69
IARI_6621 W131 Aus 95
Hsin_Hsing_Pai_Ku W132 Indica I 89
TD_70 W133 Indica Intermediate 95
Dara W134 Aus 97
Shimla_Early W135 Indica Intermediate 105
LA_PLATA_GENA_F.A. W136 VI/Aromatic 116
CM1;_HAIPONG W137 Indica Intermediate 104
4595 W138 Indica I 79
A_5 W139 Temperate Japonica 45
Ittikulama W140 Aus 96
DNJ_179 W141 Aus 86
DNJ_121 W142 Aus 85
Jyanak W143 Japonica Intermediate 112
Ao_Chiu_2_Hao W144 Indica I 105
GUYANE_1 W145 Indica Intermediate 114
10340 W146 Indica I 77
BR11 W147 Indica Intermediate 100
BR24 W148 Indica Intermediate 107
93072 W149 Indica Intermediate 93
108S W150 Indica II 112
C418 W151 Indica II 81
CDR22 W152 Indica II 101
Chenghui448 W153 Indica II 98
Fengaizhan W154 Indica II 87
Gang46B W155 Indica Intermediate 83
Gumei2hao W156 Indica I 91
Huajingxian74 W157 Indica Intermediate 94
M3122 W158 Intermediate 89
R644 W159 Indica II 90
Shennong265 W160 Temperate Japonica 89
Y134 W161 Indica II 82
Yuanjing7 W162 Temperate Japonica 105
Yuexiangzhan W163 Indica Intermediate 89
Zaoxian14 W164 Indica Intermediate 76
Zhong413 W165 Indica Intermediate 91
Zhongyouzao81 W166 Indica Intermediate 103
Zihui100 W167 Indica Intermediate 107
Bg90-2 W168 Indica II 112
IR72 W169 Indica II 98
PR106 W170 Indica II 95
TKM9 W171 Indica Intermediate 89
Amo13_(Sana) W172 Indica II 96
Khazar W173 Tropical Japonica 93
Gayabyeo W174 Indica II 97
Iksan438 W175 Intermediate 87
Milyang23 W176 Indica II 105
MR185 W177 Indica II 102
Manawthukha W178 Indica III 119
Shwe_Thwe_Yin_Hyv W179 Indica II 96
Bg300 W180 Indica Intermediate 91
Bg94-1 W181 Indica Intermediate 107
CR203 W182 Indica II 100
OM997 W183 Indica II 110
PSB_RC_28 W184 Indica II 94
PSB_RC_66 W185 Indica II 112
TEQING W186 Indica Intermediate 92
IR68552-55-3-2 W187 Indica Intermediate 92
IR66897B W188 Indica II 92
IR58025B W189 Indica II 96
Pusa_(Basmatil) W191 Intermediate 114
ASD16 W192 Intermediate 112
Dianjing W193 Temperate Japonica 101
F6 W194 Indica II 85
452 W195 Indica II 98
Ai-Zi-DAO W197 Indica II 94
Babaomi W198 Indica Intermediate 108
Diantun502 W199 Indica Intermediate 116
Heiheaihui W200 Indica Intermediate 101
Jiangxisimiao W201 Indica Intermediate 98
Laohudao W202 Indica Intermediate 99
Linjintangdao W203 Indica Intermediate 105
Mengguandamagu W204 Indica I 93
Pengshantieganzhan W205 Indica I 93
Wumanggaonuo W206 Indica Intermediate 110
Yunguang8hao W207 Temperate Japonica 99
Zhongchao123 W208 Temperate Japonica 100
Gizal159 W209 Temperate Japonica 109
Khao_Daeng W210 Indica I 87
Basmati370 W211 Indica II 94
Bhavani W212 Indica Intermediate 105
IR50 W213 Indica Intermediate 116
Jhona349 W214 Aus 105
Karnal_Local W215 Aus 101
Type3 W216 Indica II 108
IRAT352 W217 Indica Intermediate 114
TB154E-TB-2 W218 Indica Intermediate 116
Domsiah W219 VI/Aromatic 87
Tarommolai1 W220 VI/Aromatic 109
MR77_(seberang) W221 Indica Intermediate 120
ir6 W222 Indica II 105
At354 W223 Indica II 90
BG304 W224 Indica II 91
Lemont W225 Tropical Japonica 105
M401 W226 Temperate Japonica 85
OM1706 W227 Indica Intermediate 92
OM1723 W228 Indica II 105
X21 W229 Indica II 108
X22 W230 Indica II 117
X23 W231 Indica II 107
C70 W233 Indica Intermediate 93
Q5 W234 Indica Intermediate 94
Suiyangnian W235 Indica I 89
Pokhreli W236 Indica II 94
Govnd W237 Indica II 105
UPR191-66 W238 Indica II 82
ASD18 W239 Indica Intermediate 99
TGMS29 W240 Indica Intermediate 93
Phalguna W241 Indica II 102
Ajaya W242 Indica Intermediate 115
Dodda W243 Indica II 98
Palung_2 W244 Indica II 98
TKM6 W245 Indica Intermediate 92
RUSTYLATE/Zhong_413 W246 Indica Intermediate 105
Yenfangghu W247 Indica I 92
Heimichut W248 Indica I 92
Teksichut W249 Temperate Japonica 80
Eiko W250 Temperate Japonica 83
RUBIO W251 Tropical Japonica 91
SADRI_RICE_1 W252 VI/Aromatic 112
Sereendan_Kuning W253 Tropical Japonica 101
SAI-BUI-BAO W254 Tropical Japonica 102
ZIRI W255 VI/Aromatic 103
Dacca6 W256 VI/Aromatic 106
Latisai1 W257 Tropical Japonica 102
Amareles W258 VI/Aromatic 92
Up15 W259 Indica II 96
Uz-Rosz_275 W260 Tropical Japonica 90
Ginga W261 Intermediate 85
Bintapan W262 Indica I 69
SADAJIRA-19-303 W263 Indica Intermediate 112
CHOROFA W264 Indica Intermediate 87
La110 W265 Indica Intermediate 88
Yunjiang35 W266 Indica III 124
Yunhui72 W267 Indica Intermediate 83
Wudadaozhong W268 Indica Intermediate 89
IR65600-27-1-2-2 W269 Indica Intermediate 88
Yetuozai W270 Indica Intermediate 85
P59279 W271 Indica Intermediate 78
Tsao_wan_ching W272 Indica Intermediate 117
Anambae_ndanggalasi W273 Tropical Japonica 109
Er_chiu_ching W274 Indica I 66
Heen_goda_wee W275 Tropical Japonica 113
Pathma_wee W276 Indica III 109
Lakkhi_kajal W277 Aus 102
Moisdol W278 Aus 103
Jabor_sail W279 Aus 103
Sada_solay W280 Aus 109
Sholay W281 Temperate Japonica 105
Ma_ba_you_zhan W282 Indica Intermediate 124
Daegujo W283 Temperate Japonica 73
Paikasa W284 Tropical Japonica 117
Uwi W285 Tropical Japonica 116
Garia W286 Aus 103
AUS_449 W287 Aus 100
Dourado_Precoce W288 Tropical Japonica 103
IR_661-1-140-3-117 W289 Indica II 99
Aichi_Asahi W290 Temperate Japonica 102
IR_2071-625-1-252 W291 Indica II 105
Khoia_boro W292 Aus 97
IR_8 W293 Indica II 113
LABELLE W294 Intermediate 104
LEBONNET W295 Indica II 106
AUS_371 W296 Aus 102
AUS_373 W297 Aus 102
IR_36 W298 Indica II 104
JAYA W299 Indica Intermediate 93
NEW_BONNET W300 Tropical Japonica 97
IR_64 W301 Indica II 105
KUNTLAN W302 Tropical Japonica 105
British_Honduras_Creole W303 Tropical Japonica 96
CPSLO_17 W304 Intermediate 117
AKITAKOMACHI W305 Temperate Japonica 82
BASMATI_385 W306 VI/Aromatic 119
AGNO_(PSBRC28) W307 Indica II 94
PSBRC82 W308 Indica II 120
NSICRC122 W309 Indica II 120
BRRI_DHAN_29 W310 Indica Intermediate 111
PR_116 W311 Indica II 111
CIGEULIS W312 Indica II 105
OM_2517 W313 Indica II 94
BRRI_DHAN_28 W314 Indica II 95
CIBOGO W315 Indica II 105
NEDA W316 Indica II 92
CIHERANG W317 Indica II 106
Qiuqianbai W318 Indica I 77
Guangkexiangnuo W319 Temperate Japonica 127
Wenxiangnuo W320 Indica Intermediate 124
Laozaogu W321 Indica III 117
Lengshuinuo W322 Indica Intermediate 93
Feienuo2 W323 Japonica Intermediate 115
Zimangfeie W324 Japonica Intermediate 125
Guantuibaihe W325 Temperate Japonica 117
Haolvguangnian W326 Japonica Intermediate 125
JinghuB W327 Temperate Japonica 88
Sibeitichao6 W328 Intermediate 91
GPNO_5055 W329 Tropical Japonica 107
ASWINA_330 W330 Aus 93

GWAS Results:

Note: If the P-value of Linear Regression (LR) or Linear Mixed Model (LMM) ≤ 1e-5 or the rank ≤ 20000, the results are saved. Only the LMM results are plotted below.

Significant Candidate Loci (Lead SNP):

Variation IDVariation ID V6ChromosomePositionLR P-value LMM P-value
vg0503927501 sf0503927478 5 3927501 1.57E-21 7.13E-07
vg0423591420 sf0423406277 4 23591420 6.35E-21 NA
vg0809213665 sf0809212669 8 9213665 6.90E-21 NA
vg0431887812 sf0431702707 4 31887812 2.59E-20 NA
vg0210594191 sf0210594189 2 10594191 5.93E-20 NA
vg0603485348 sf0603484349 6 3485348 3.77E-17 1.10E-10
vg0503613659 sf0503613636 5 3613659 2.22E-16 7.69E-08
vg0809531576 sf0809530580 8 9531576 2.17E-13 NA
vg0727745937 sf0727744944 7 27745937 1.48E-12 3.71E-07
vg0603243535 sf0603242536 6 3243535 8.68E-12 1.84E-07
vg0618886440 sf0618885443 6 18886440 1.21E-10 NA
vg0719886721 sf0719885728 7 19886721 1.78E-10 7.09E-08
vg0431851987 sf0431666881 4 31851987 2.14E-10 NA
vg1219847688 sf1219819158 12 19847688 7.76E-10 3.12E-07
vg0404292000 sf0404287606 4 4292000 NA 1.16E-10
vg1000923572 sf1000922548 10 923572 NA 8.38E-09
vg0235186837 sf0235180968 2 35186837 NA 1.25E-08
vg0522269975 sf0522207416 5 22269975 NA 1.29E-08
vg0719886670 sf0719885677 7 19886670 NA 1.59E-08
vg0809823253 sf0809822257 8 9823253 NA 1.99E-08
vg0402827223 sf0402822828 4 2827223 NA 6.09E-08
vg1206429009 sf1206427899 12 6429009 NA 7.42E-08
vg0620862314 sf0620861317 6 20862314 NA 2.15E-07
vg0507101071 sf0507101013 5 7101071 NA 3.45E-07
vg1102756844 sf1102752748 11 2756844 NA 3.63E-07