43 variations found. Os02g0553200/LOC_Os02g34810 (OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5;8; expressed), ranging from 20,868,259 bp to 20,872,079 bp (including 0 kb upstream and 0 kb downstream of the gene).
| Gene ID | Annotation |
|---|---|
| LOC_Os02g34810 | OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed; RAP ID: Os02g0553200; MSU ID: LOC_Os02g34810 |
| MSU ID | RAP ID | Symbol | Name | Explanation | Recommended Gene Symbol | Recommended Gene Name |
|---|---|---|---|---|---|---|
| LOC_Os02g34810 | Os02g0553200 | OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8 | ascorbate peroxidase 8 | BAC79363. Q69SV0. AB114856. Thylakoid-bound Ascorbate Peroxidase. | APX8 | ASCORBATE PEROXIDASE 8 |
The expression data is from the CREP database. And the expression value is log2-transformed. Move the mouse over the cells of the heat map to get detailed tissue information and expression values.
| Color | Explain | Details |
|---|---|---|
| red | High impact variants defined by snpEff | 'STOP_LOST', 'START_LOST', 'STOP_GAINED', 'FRAME_SHIFT' et. al., the details can be found at http://snpef f.sourceforge.net/SnpEff_manual.html#eff. |
| purple | 'Damaging' or 'probably damaging' non-synonymous SNPs defined by PolyPhen-2 | This is a qualitative result of nonsynonymous SNP annotation, where 'damaging' or 'probably damaging' means that the variant is more likely to affect protein function. Details can be found here. |
| Var ID | Chrom | Position | Primary Allele | Secondary Allele | Primary Allele Frequency | DEL Frequency | Var | GWAS Results | Effect |
|---|---|---|---|---|---|---|---|---|---|
| STR0220868947 (J) | chr02 | 20868947 | TACTGGA A | TACTGGT A | 62.00% | 0.00% | TACTGGTA -> TACTGGAA | NA |
|
| STR0220869551 (J) | chr02 | 20869551 | AA | AAAA | 63.40% | 0.00% | AAA -> AA,AAAA | NA |
|
| STR0220869576 (J) | chr02 | 20869576 | T | C | 99.70% | 0.00% | T -> C | NA |
|
| vg0220868305 (J) | chr02 | 20868305 | A | AAG | 56.90% | 0.00% | AAG -> A | NA |
LOC_Os02g34810.1 Alt: A| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os02g34800.1 Alt: A| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 52.059; most accessible tissue: Callus, score: 85.005 |
| vg0220868328 (J) | chr02 | 20868328 | C | T | 74.20% | 0.30% | C -> T | NA |
LOC_Os02g34810.1 Alt: T| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os02g34800.1 Alt: T| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) N Alt: DEL/silent_mutation(CooVar) The average chromatin accessibility score: 46.446; most accessible tissue: Minghui63 flag leaf, score: 66.004 |
| vg0220868380 (J) | chr02 | 20868380 | A | C | 99.70% | 0.00% | A -> AAT,C | NA |
LOC_Os02g34810.1 Alt: AAT| 3_prime_UTR_variant MODIFIER(snpEff)
LOC_Os02g34800.1 Alt: AAT| upstream_gene_variant MODIFIER(snpEff) LOC_Os02g34810.1 Alt: C| 3_prime_UTR_variant MODIFIER(snpEff) LOC_Os02g34800.1 Alt: C| upstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 49.221; most accessible tissue: Minghui63 flag leaf, score: 69.182 |
| vg0220868588 (J) | chr02 | 20868588 | A | G | 63.80% | 0.00% | G -> A | NA |
LOC_Os02g34810.1 Alt: A| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os02g34800.1 Alt: A| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 65.301; most accessible tissue: Minghui63 flag leaf, score: 82.975 |
| vg0220868634 (J) | chr02 | 20868634 | C | T | 95.00% | 0.00% | C -> T |
LOC_Os02g34810.1 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar)
The average chromatin accessibility score: 66.738; most accessible tissue: Minghui63 flag leaf, score: 84.973 |
|
| vg0220868844 (J) | chr02 | 20868844 | AT | A | 94.90% | 0.00% | AT -> A | NA |
LOC_Os02g34810.1 Alt: A| splice_region_variant&intron_variant LOW(snpEff)/silent_mutation(CooVar)
LOC_Os02g34800.1 Alt: A| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g34820.1 Alt: A| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 73.848; most accessible tissue: Minghui63 flag leaf, score: 90.753 |
| vg0220868953 (J) | chr02 | 20868953 | A | T | 55.50% | 0.00% | T -> A |
mr1094 (All); LR P-value: 5.86E-36;
mr1110 (All); LR P-value: 3.73E-38; mr1121 (All); LR P-value: 4.03E-48; mr1125 (All); LR P-value: 8.83E-48; mr1144 (All); LR P-value: 8.93E-43; mr1151 (All); LR P-value: 1.57E-09; mr1213 (All); LR P-value: 4.38E-32; mr1246 (All); LR P-value: 9.17E-64; mr1379 (All); LR P-value: 2.15E-09; mr1457 (All); LR P-value: 1.01E-09; mr1458 (All); LR P-value: 1.40E-45; mr1524 (All); LR P-value: 9.31E-10; mr1537 (All); LR P-value: 3.41E-25; mr1559 (All); LR P-value: 1.08E-07; mr1591 (All); LR P-value: 4.12E-42; mr1657 (All); LR P-value: 4.13E-11; mr1720 (All); LR P-value: 7.08E-11; mr1084_2 (All); LR P-value: 1.11E-07; mr1110_2 (All); LR P-value: 1.69E-37; mr1151_2 (All); LR P-value: 8.71E-13; mr1198_2 (All); LR P-value: 6.02E-09; mr1454_2 (All); LR P-value: 7.83E-14; mr1458_2 (All); LR P-value: 3.75E-52; mr1514_2 (All); LR P-value: 1.12E-12; mr1649_2 (All); LR P-value: 3.46E-09; mr1943_2 (All); LR P-value: 1.31E-25 |
LOC_Os02g34810.1 Alt: A| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar)
The average chromatin accessibility score: 72.362; most accessible tissue: Minghui63 flag leaf, score: 89.523 |
| vg0220869003 (J) | chr02 | 20869003 | C | G | 55.00% | 0.00% | G -> C |
mr1094 (All); LR P-value: 4.71E-35;
mr1110 (All); LR P-value: 3.58E-37; mr1144 (All); LR P-value: 2.52E-42; mr1151 (All); LR P-value: 8.06E-10; mr1213 (All); LR P-value: 1.00E-32; mr1246 (All); LR P-value: 4.24E-63; mr1379 (All); LR P-value: 2.10E-09; mr1457 (All); LR P-value: 4.03E-09; mr1458 (All); LR P-value: 7.83E-44; mr1537 (All); LR P-value: 2.78E-25; mr1559 (All); LR P-value: 7.66E-08; mr1591 (All); LR P-value: 7.44E-44; mr1657 (All); LR P-value: 1.03E-11; mr1720 (All); LR P-value: 1.19E-11; mr1084_2 (All); LR P-value: 1.41E-08; mr1151_2 (All); LR P-value: 1.28E-13; mr1198_2 (All); LR P-value: 1.61E-09; mr1205_2 (All); LR P-value: 1.28E-07; mr1319_2 (All); LR P-value: 6.21E-09; mr1454_2 (All); LR P-value: 1.26E-13; mr1458_2 (All); LR P-value: 2.80E-49; mr1514_2 (All); LR P-value: 1.05E-12; mr1825_2 (All); LR P-value: 1.49E-29; mr1885_2 (All); LR P-value: 1.99E-07; mr1943_2 (All); LR P-value: 3.58E-26 |
LOC_Os02g34810.1 Alt: C| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)
The average chromatin accessibility score: 71.218; most accessible tissue: Minghui63 flag leaf, score: 88.342 |
| vg0220869088 (J) | chr02 | 20869088 | C | G | 70.30% | 0.32% | C -> G | NA |
LOC_Os02g34800.1 Alt: G| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os02g34820.1 Alt: G| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g34810.1 Alt: G| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) N Alt: DEL/silent_mutation(CooVar) The average chromatin accessibility score: 66.616; most accessible tissue: Minghui63 flag leaf, score: 87.594 |
| vg0220869217 (J) | chr02 | 20869217 | C | T | 57.10% | 0.02% | T -> C |
mr1151 (All); LR P-value: 1.76E-10;
mr1181 (All); LR P-value: 1.96E-25; mr1213 (All); LR P-value: 2.27E-34; mr1218 (All); LR P-value: 7.95E-14; mr1246 (All); LR P-value: 3.83E-68; mr1249 (All); LR P-value: 1.15E-09; mr1379 (All); LR P-value: 5.59E-12; mr1404 (All); LR P-value: 2.48E-34; mr1457 (All); LR P-value: 2.82E-09; mr1458 (All); LR P-value: 1.39E-42; mr1559 (All); LR P-value: 3.29E-10; mr1580 (All); LR P-value: 1.37E-19; mr1591 (All); LR P-value: 7.46E-44; mr1084_2 (All); LR P-value: 2.31E-09; mr1092_2 (All); LR P-value: 5.73E-41; mr1128_2 (All); LR P-value: 1.84E-13; mr1151_2 (All); LMM P-value: 7.31E-06; LR P-value: 6.07E-16; mr1152_2 (All); LR P-value: 3.29E-41; mr1154_2 (All); LR P-value: 1.02E-51; mr1198_2 (All); LR P-value: 1.47E-11; mr1205_2 (All); LR P-value: 1.91E-08; mr1218_2 (All); LR P-value: 9.78E-20; mr1220_2 (All); LR P-value: 6.78E-09; mr1246_2 (All); LR P-value: 2.34E-76; mr1275_2 (All); LR P-value: 6.11E-07; mr1302_2 (All); LR P-value: 1.36E-07; mr1379_2 (All); LR P-value: 3.66E-09; mr1488_2 (All); LR P-value: 3.82E-07; mr1506_2 (All); LR P-value: 8.90E-11; mr1521_2 (All); LR P-value: 3.06E-13; mr1559_2 (All); LR P-value: 6.47E-07; mr1580_2 (All); LR P-value: 2.07E-29; mr1604_2 (All); LR P-value: 1.76E-08; mr1824_2 (All); LR P-value: 3.22E-07; mr1825_2 (All); LR P-value: 8.54E-31; mr1873_2 (All); LR P-value: 1.84E-32; mr1885_2 (All); LR P-value: 1.12E-07; mr1922_2 (All); LR P-value: 2.35E-19; mr1924_2 (All); LR P-value: 1.94E-22; mr1943_2 (All); LR P-value: 5.00E-25; mr1944_2 (All); LR P-value: 5.36E-44; mr1992_2 (All); LR P-value: 9.50E-06 |
N Alt: DEL/silent_mutation(CooVar)
LOC_Os02g34800.1 Alt: C| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g34820.1 Alt: C| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g34810.1 Alt: C| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 57.355; most accessible tissue: Minghui63 flag leaf, score: 80.516 |
| vg0220869460 (J) | chr02 | 20869460 | C | G | 57.00% | 0.00% | G -> C |
mr1086 (All); LR P-value: 1.34E-30;
mr1107 (All); LR P-value: 3.72E-30; mr1151 (All); LR P-value: 8.82E-10; mr1213 (All); LR P-value: 1.75E-35; mr1246 (All); LR P-value: 1.85E-66; mr1249 (All); LR P-value: 7.90E-10; mr1281 (All); LR P-value: 9.45E-11; mr1379 (All); LR P-value: 1.62E-11; mr1404 (All); LR P-value: 2.48E-34; mr1416 (All); LR P-value: 1.49E-21; mr1457 (All); LR P-value: 2.03E-09; mr1458 (All); LR P-value: 1.01E-42; mr1537 (All); LR P-value: 2.77E-24; mr1559 (All); LR P-value: 7.44E-10; mr1591 (All); LR P-value: 2.02E-44; mr1084_2 (All); LR P-value: 2.29E-09; mr1092_2 (All); LR P-value: 6.02E-41; mr1128_2 (All); LR P-value: 3.32E-13; mr1151_2 (All); LR P-value: 1.05E-15; mr1152_2 (All); LR P-value: 1.27E-40; mr1154_2 (All); LR P-value: 1.73E-51; mr1198_2 (All); LR P-value: 2.08E-11; mr1205_2 (All); LR P-value: 1.44E-08; mr1218_2 (All); LR P-value: 6.10E-19; mr1246_2 (All); LR P-value: 5.67E-76; mr1275_2 (All); LR P-value: 6.62E-07; mr1302_2 (All); LR P-value: 5.09E-08; mr1338_2 (All); LR P-value: 5.69E-10; mr1379_2 (All); LR P-value: 5.45E-09; mr1418_2 (All); LR P-value: 1.01E-06; mr1488_2 (All); LR P-value: 2.01E-07; mr1506_2 (All); LR P-value: 2.69E-11; mr1521_2 (All); LR P-value: 8.55E-13; mr1559_2 (All); LR P-value: 8.43E-07; mr1604_2 (All); LR P-value: 6.74E-09; mr1824_2 (All); LR P-value: 6.54E-08; mr1825_2 (All); LR P-value: 5.20E-30; mr1838_2 (All); LR P-value: 4.77E-13; mr1885_2 (All); LR P-value: 1.27E-07; mr1924_2 (All); LR P-value: 9.50E-22; mr1944_2 (All); LR P-value: 1.48E-43; mr1992_2 (All); LR P-value: 4.10E-06 |
LOC_Os02g34800.1 Alt: C| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os02g34820.1 Alt: C| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g34810.1 Alt: C| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 54.207; most accessible tissue: Callus, score: 76.487 |
| vg0220869550 (J) | chr02 | 20869550 | G | GA | 58.60% | 0.00% | GA -> G,GAA | NA |
LOC_Os02g34800.1 Alt: G| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os02g34820.1 Alt: G| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g34810.1 Alt: G| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g34800.1 Alt: GAA| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g34820.1 Alt: GAA| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g34810.1 Alt: GAA| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 51.604; most accessible tissue: Callus, score: 76.487 |
| vg0220869565 (J) | chr02 | 20869565 | T | C | 74.10% | 0.00% | T -> C | NA |
LOC_Os02g34800.1 Alt: C| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os02g34820.1 Alt: C| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g34810.1 Alt: C| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 51.929; most accessible tissue: Callus, score: 76.487 |
| vg0220869576 (J) | chr02 | 20869576 | T | C | 98.40% | 0.00% | T -> C | NA |
LOC_Os02g34810.1 Alt: C| missense_variant&splice_region_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/possibly damaging(PolyPhen-2)
The average chromatin accessibility score: 50.534; most accessible tissue: Zhenshan97 young leaf, score: 68.794 |
| vg0220869926 (J) | chr02 | 20869926 | G | A | 95.00% | 0.00% | G -> A |
LOC_Os02g34810.1 Alt: A| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar)
The average chromatin accessibility score: 52.152; most accessible tissue: Callus, score: 82.045 |
|
| vg0220870008 (J) | chr02 | 20870008 | G | A | 70.00% | 0.00% | A -> G |
LOC_Os02g34800.1 Alt: G| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os02g34820.1 Alt: G| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g34810.1 Alt: G| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 49.350; most accessible tissue: Callus, score: 82.045 |
|
| vg0220870143 (J) | chr02 | 20870143 | A | G | 99.90% | 0.00% | A -> G | NA |
LOC_Os02g34800.1 Alt: G| upstream_gene_variant MODIFIER(snpEff)
LOC_Os02g34820.1 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os02g34810.1 Alt: G| intron_variant MODIFIER(snpEff) The average chromatin accessibility score: 45.932; most accessible tissue: Minghui63 flag leaf, score: 61.847 |
| vg0220870149 (J) | chr02 | 20870149 | G | A | 93.80% | 0.00% | G -> A | NA |
LOC_Os02g34800.1 Alt: A| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os02g34820.1 Alt: A| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g34810.1 Alt: A| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 45.358; most accessible tissue: Minghui63 flag leaf, score: 59.244 |
| vg0220870201 (J) | chr02 | 20870201 | C | CA | 57.10% | 0.00% | CA -> C | NA |
LOC_Os02g34800.1 Alt: C| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os02g34820.1 Alt: C| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g34810.1 Alt: C| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 41.307; most accessible tissue: Callus, score: 66.522 |
| vg0220870411 (J) | chr02 | 20870411 | C | T | 99.60% | 0.00% | C -> T | NA |
LOC_Os02g34820.1 Alt: T| downstream_gene_variant MODIFIER(snpEff)
LOC_Os02g34810.1 Alt: T| intron_variant MODIFIER(snpEff) The average chromatin accessibility score: 40.996; most accessible tissue: Minghui63 flower, score: 62.973 |
| vg0220870412 (J) | chr02 | 20870412 | G | A | 99.80% | 0.00% | G -> A | NA |
LOC_Os02g34820.1 Alt: A| downstream_gene_variant MODIFIER(snpEff)
LOC_Os02g34810.1 Alt: A| intron_variant MODIFIER(snpEff) The average chromatin accessibility score: 41.084; most accessible tissue: Minghui63 flower, score: 62.973 |
| vg0220870440 (J) | chr02 | 20870440 | A | G | 56.90% | 0.00% | G -> A | NA |
LOC_Os02g34820.1 Alt: A| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os02g34810.1 Alt: A| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 44.508; most accessible tissue: Callus, score: 76.091 |
Address: Room B111, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural university, Wuhan, 430070, China
Comments or Questions? Please contact us. Our website: http://xielab.ncpgr.cn/