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Detailed information for vg0220870440:

Variant ID: vg0220870440 (JBrowse)	Variation Type: SNP
Chromosome: chr02	Position: 20870440
Reference Allele: G	Alternative Allele: A
Primary Allele: A	Secondary Allele: G

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 0.91, A: 0.09, others allele: 0.00, population size: 177. )

Flanking Sequence (100 bp) in Reference Genome:

CATTGTTTTCACCTCTGCCTGAATGTCTCAAAAAATGTAGGGGCAATTGCAAATTTACCACTACTTTGAATCGTTATTGCAAAACTGCCACTAGAAAATT[G/A]
CAAAAATATCACTAGAACTGTCATTCGAGTAGCATCCTTGCAATATTGAAAAAACCGGTGGCAAATTTGCAAATGCCCCAAAAATGTAATATTCTATACC

Reverse complement sequence

GGTATAGAATATTACATTTTTGGGGCATTTGCAAATTTGCCACCGGTTTTTTCAATATTGCAAGGATGCTACTCGAATGACAGTTCTAGTGATATTTTTG[C/T]
AATTTTCTAGTGGCAGTTTTGCAATAACGATTCAAAGTAGTGGTAAATTTGCAATTGCCCCTACATTTTTTGAGACATTCAGGCAGAGGTGAAAACAATG

Allele Frequencies:

Allele Effect: