Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


TGTAATTTCAGAAAATAGGCGCTCAAACATGATGCATCTATACTTAGTTAGAGCCCCTGCTAACCACTATTACCGATGCTTTAGATAAATGCTGCTGCTA[TTT/TT]
TTTTTCATTGGGATCTATTCCGCGACTGTTTTAGTAATTCTACTAATTGAATTGAAATTTCCCAAAAGCAATCCTTCTGTTAAGCTTGGTTGGACTGAAT

Reverse complement sequence

ATTCAGTCCAACCAAGCTTAACAGAAGGATTGCTTTTGGGAAATTTCAATTCAATTAGTAGAATTACTAAAACAGTCGCGGAATAGATCCCAATGAAAAA[AAA/AA]
TAGCAGCAGCATTTATCTAAAGCATCGGTAATAGTGGTTAGCAGGGGCTCTAACTAAGTATAGATGCATCATGTTTGAGCGCCTATTTTCTGAAATTACA

Allele Frequencies:

Populations Population SizeFrequency of TTT(primary allele) Frequency of TT(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 98.30% 0.40% 1.29% 0.00% NA
All Indica  492 98.40% 0.60% 1.02% 0.00% NA
All Japonica  244 98.40% 0.00% 1.64% 0.00% NA
Aus  7 100.00% 0.00% 0.00% 0.00% NA
Indica I  492 98.40% 0.60% 1.02% 0.00% NA
Indica II  215 98.60% 0.00% 1.40% 0.00% NA
Indica III  21 100.00% 0.00% 0.00% 0.00% NA
Indica Intermediate  190 97.90% 1.60% 0.53% 0.00% NA
Temperate Japonica  189 98.90% 0.00% 1.06% 0.00% NA
Tropical Japonica  36 100.00% 0.00% 0.00% 0.00% NA
Japonica Intermediate  19 89.50% 0.00% 10.53% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 97.00% 1.30% 1.73% 0.00% NA