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Detailed information for vg0220868328:

Variant ID: vg0220868328 (JBrowse)	Variation Type: SNP
Chromosome: chr02	Position: 20868328
Reference Allele: C	Alternative Allele: T
Primary Allele: C	Secondary Allele: T

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 0.99, others allele: 0.00, population size: 232. )

Flanking Sequence (100 bp) in Reference Genome:

TTTTAAGAAGTAAATATATATACAATGTTCTTGGAGAGGAAAATGCACTTTCCTTTTATACTGAACATGCCATAAGAAAGAGTGATATATGGGGTGTCCT[C/T]
ATTATTTCCCTCCTTAGTTTAGAGAATGTCATAATTTCCCTCAGTATAGAGAATGTAGTCATGAGCCATGACAACTAGATAATGTGACATTTCTCTCCGA

Reverse complement sequence

TCGGAGAGAAATGTCACATTATCTAGTTGTCATGGCTCATGACTACATTCTCTATACTGAGGGAAATTATGACATTCTCTAAACTAAGGAGGGAAATAAT[G/A]
AGGACACCCCATATATCACTCTTTCTTATGGCATGTTCAGTATAAAAGGAAAGTGCATTTTCCTCTCCAAGAACATTGTATATATATTTACTTCTTAAAA

Allele Frequencies:

Allele Effect: