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Detailed information for vg0220870143:

Variant ID: vg0220870143 (JBrowse)Variation Type: SNP
Chromosome: chr02Position: 20870143
Reference Allele: AAlternative Allele: G
Primary Allele: ASecondary Allele: G

Inferred Ancestral Allele : A (evidence from allele frequency in Oryza rufipogon: A: 1.00, others allele: 0.00, population size: 281. )

Flanking Sequence (100 bp) in Reference Genome:


TAATCTGATTTGCTATTGTGCTGGTGTGATTAAGGTAAGATTGCATCGAAAAGTTAATCTTCATTTCCCCACAGAGAAGTATCAGGGCTTAGAGAATGAC[A/G]
AAGTTGTTAGCTATGAAGTTCTTAGCATCCTAATTCTATTTTACCATTATATGCATACAAAAGAAACGTAAGGATAACCCATTTTGTAAAATCCTGAATT

Reverse complement sequence

AATTCAGGATTTTACAAAATGGGTTATCCTTACGTTTCTTTTGTATGCATATAATGGTAAAATAGAATTAGGATGCTAAGAACTTCATAGCTAACAACTT[T/C]
GTCATTCTCTAAGCCCTGATACTTCTCTGTGGGGAAATGAAGATTAACTTTTCGATGCAATCTTACCTTAATCACACCAGCACAATAGCAAATCAGATTA

Allele Frequencies:

Allele Effect: