Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Detailed information for vg0220870149:

Variant ID: vg0220870149 (JBrowse)	Variation Type: SNP
Chromosome: chr02	Position: 20870149
Reference Allele: G	Alternative Allele: A
Primary Allele: G	Secondary Allele: A

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 0.99, A: 0.00, others allele: 0.00, population size: 277. )

Flanking Sequence (100 bp) in Reference Genome:

GATTTGCTATTGTGCTGGTGTGATTAAGGTAAGATTGCATCGAAAAGTTAATCTTCATTTCCCCACAGAGAAGTATCAGGGCTTAGAGAATGACAAAGTT[G/A]
TTAGCTATGAAGTTCTTAGCATCCTAATTCTATTTTACCATTATATGCATACAAAAGAAACGTAAGGATAACCCATTTTGTAAAATCCTGAATTAAAACA

Reverse complement sequence

TGTTTTAATTCAGGATTTTACAAAATGGGTTATCCTTACGTTTCTTTTGTATGCATATAATGGTAAAATAGAATTAGGATGCTAAGAACTTCATAGCTAA[C/T]
AACTTTGTCATTCTCTAAGCCCTGATACTTCTCTGTGGGGAAATGAAGATTAACTTTTCGATGCAATCTTACCTTAATCACACCAGCACAATAGCAAATC

Allele Frequencies:

Allele Effect: