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Detailed information for vg0220869565:

Variant ID: vg0220869565 (JBrowse)	Variation Type: SNP
Chromosome: chr02	Position: 20869565
Reference Allele: T	Alternative Allele: C
Primary Allele: T	Secondary Allele: C

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 0.99, C: 0.01, others allele: 0.00, population size: 295. )

Flanking Sequence (100 bp) in Reference Genome:

TTCTAATAAAAGAACTTAAGAGCTTAAGTGTCTTTCGTATTGTTTATGATTGTTTAGGCACAATTGGTTGCCAGGAGATCAAAATGAAAAAAAAAGATGG[T/C]
AGTCCTCACCTCAGGTGGATCGAACTTTGCACCAAGGTCGCTCAGTTTAGCATGAGCTTCAGCGTAGTCTTTAAAGAATGCCTCCTGATCCTCTGCATAT

Reverse complement sequence

ATATGCAGAGGATCAGGAGGCATTCTTTAAAGACTACGCTGAAGCTCATGCTAAACTGAGCGACCTTGGTGCAAAGTTCGATCCACCTGAGGTGAGGACT[A/G]
CCATCTTTTTTTTTCATTTTGATCTCCTGGCAACCAATTGTGCCTAAACAATCATAAACAATACGAAAGACACTTAAGCTCTTAAGTTCTTTTATTAGAA

Allele Frequencies:

Allele Effect: