Phenotype and GWAS Information:

Agronomic Traits

Note: All the agronomic trait is from the article Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection.

Metabolic Traits

Note: All the metabolic trait is from the article Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism. Some metabolics have two replications, the second replication is end with '_2', like 'mr1002_2'.

Search Results:

The detailed information about mr1295 can be find at here.

GWAS Results:

Note: If the P-value of Linear Regression (LR) or Linear Mixed Model (LMM) ≤ 1e-5 or the rank ≤ 20000, the results are saved. Only the LMM results are plotted below.

Significant Candidate Loci (Lead SNP):

Variation IDVariation ID V6ChromosomePositionLR P-value LMM P-value
vg1127494061 sf1127022448 11 27494061 1.18E-07 2.02E-06
vg0921125028 sf0921124547 9 21125028 1.61E-06 4.23E-06
vg0620296856 sf0620295859 6 20296856 9.61E-06 NA
vg1218165645 sf1218137081 12 18165645 NA 1.10E-06
vg1112803368 sf1112339689 11 12803368 NA 5.90E-06