Phenotype and GWAS Information:

Agronomic Traits

Note: All the agronomic trait is from the article Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection.

Metabolic Traits

Note: All the metabolic trait is from the article Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism. Some metabolics have two replications, the second replication is end with '_2', like 'mr1002_2'.

Search Results:

The detailed information about mr1167 can be find at here.

GWAS Results:

Note: If the P-value of Linear Regression (LR) or Linear Mixed Model (LMM) ≤ 1e-5 or the rank ≤ 20000, the results are saved. Only the LMM results are plotted below.

Significant Candidate Loci (Lead SNP):

Variation IDVariation ID V6ChromosomePositionLR P-value LMM P-value
vg0619749410 sf0619748413 6 19749410 2.17E-08 NA
vg0712111505 sf0712110511 7 12111505 2.99E-08 NA
vg0803095828 sf0803094831 8 3095828 8.72E-07 NA
vg0619241795 sf0619240798 6 19241795 1.77E-06 NA
vg0205347525 sf0205347525 2 5347525 NA 1.22E-06