40 variations found. Os07g0668000/LOC_Os07g47180 (transposon protein; putative; unclassified; expressed), ranging from 28,206,286 bp to 28,210,751 bp (including 0 kb upstream and 0 kb downstream of the gene).
| Gene ID | Annotation |
|---|---|
| LOC_Os07g47180 | transposon protein, putative, unclassified, expressed; RAP ID: Os07g0668000; MSU ID: LOC_Os07g47180 |
| MSU ID | RAP ID | Symbol | Name | Explanation | Recommended Gene Symbol | Recommended Gene Name |
|---|---|---|---|---|---|---|
| LOC_Os07g47180 | Os07g0668000 | Orysa;CKL6 | CDK-LIKE 6, cyclin-dependent kinase-like 6 | _ | _ |
The expression data is from the CREP database. And the expression value is log2-transformed. Move the mouse over the cells of the heat map to get detailed tissue information and expression values.
| Color | Explain | Details |
|---|---|---|
| red | High impact variants defined by snpEff | 'STOP_LOST', 'START_LOST', 'STOP_GAINED', 'FRAME_SHIFT' et. al., the details can be found at http://snpef f.sourceforge.net/SnpEff_manual.html#eff. |
| purple | 'Damaging' or 'probably damaging' non-synonymous SNPs defined by PolyPhen-2 | This is a qualitative result of nonsynonymous SNP annotation, where 'damaging' or 'probably damaging' means that the variant is more likely to affect protein function. Details can be found here. |
| Var ID | Chrom | Position | Primary Allele | Secondary Allele | Primary Allele Frequency | DEL Frequency | Var | GWAS Results | Effect |
|---|---|---|---|---|---|---|---|---|---|
| STR0728210425 (J) | chr07 | 28210425 | TTT | TT | 75.20% | 0.00% | TTT -> TT | NA |
|
| vg0728206318 (J) | chr07 | 28206318 | GCCGCCC | G | 39.50% | 12.42% | GCCGCCC -> G | NA |
N Alt: DEL/silent_mutation(CooVar)
LOC_Os07g47180.2 Alt: G| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os07g47180.1 Alt: G| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os07g47194.1 Alt: G| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os07g47194.3 Alt: G| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os07g47194.2 Alt: G| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 98.466; most accessible tissue: Minghui63 root, score: 99.269 |
| vg0728206406 (J) | chr07 | 28206406 | G | A | 56.40% | 21.63% | G -> A | NA |
LOC_Os07g47180.1 Alt: DEL/frameshift_variant(CooVar)
LOC_Os07g47180.2 Alt: DEL/frameshift_variant(CooVar) LOC_Os07g47180.1 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) LOC_Os07g47180.2 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) The average chromatin accessibility score: 95.317; most accessible tissue: Minghui63 root, score: 99.242 |
| vg0728206410 (J) | chr07 | 28206410 | G | A | 56.30% | 21.73% | G -> A | NA |
LOC_Os07g47180.1 Alt: DEL/frameshift_variant(CooVar)
LOC_Os07g47180.2 Alt: DEL/frameshift_variant(CooVar) LOC_Os07g47180.1 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) LOC_Os07g47180.2 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) The average chromatin accessibility score: 95.283; most accessible tissue: Minghui63 root, score: 99.216 |
| vg0728206437 (J) | chr07 | 28206437 | C | T | 54.60% | 18.71% | C -> T | NA |
LOC_Os07g47180.1 Alt: DEL/frameshift_variant(CooVar)
LOC_Os07g47180.2 Alt: DEL/frameshift_variant(CooVar) LOC_Os07g47180.1 Alt: T| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) LOC_Os07g47180.2 Alt: T| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) The average chromatin accessibility score: 96.027; most accessible tissue: Minghui63 flower, score: 99.118 |
| vg0728206438 (J) | chr07 | 28206438 | C | G | 55.40% | 23.30% | C -> G | NA |
LOC_Os07g47180.1 Alt: DEL/frameshift_variant(CooVar)
LOC_Os07g47180.2 Alt: DEL/frameshift_variant(CooVar) LOC_Os07g47180.1 Alt: G| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) LOC_Os07g47180.2 Alt: G| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) The average chromatin accessibility score: 96.031; most accessible tissue: Minghui63 flower, score: 99.121 |
| vg0728206449 (J) | chr07 | 28206449 | G | A | 55.40% | 23.30% | G -> A | NA |
LOC_Os07g47180.1 Alt: DEL/frameshift_variant(CooVar)
LOC_Os07g47180.2 Alt: DEL/frameshift_variant(CooVar) LOC_Os07g47180.1 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) LOC_Os07g47180.2 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) The average chromatin accessibility score: 96.064; most accessible tissue: Minghui63 flower, score: 99.162 |
| vg0728206459 (J) | chr07 | 28206459 | C | G | 55.50% | 23.38% | C -> G | NA |
LOC_Os07g47180.1 Alt: DEL/frameshift_variant(CooVar)
LOC_Os07g47180.2 Alt: DEL/frameshift_variant(CooVar) LOC_Os07g47180.1 Alt: G| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) LOC_Os07g47180.2 Alt: G| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) The average chromatin accessibility score: 95.783; most accessible tissue: Minghui63 flower, score: 99.030 |
| vg0728206467 (J) | chr07 | 28206467 | C | G | 54.50% | 18.90% | C -> G | NA |
LOC_Os07g47180.1 Alt: DEL/frameshift_variant(CooVar)
LOC_Os07g47180.2 Alt: DEL/frameshift_variant(CooVar) LOC_Os07g47180.1 Alt: G| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) LOC_Os07g47180.2 Alt: G| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) The average chromatin accessibility score: 95.676; most accessible tissue: Minghui63 flower, score: 98.983 |
| vg0728206470 (J) | chr07 | 28206470 | C | CT | 55.80% | 23.38% | C -> CT | NA |
LOC_Os07g47180.1 Alt: DEL/frameshift_variant(CooVar)
LOC_Os07g47180.2 Alt: DEL/frameshift_variant(CooVar) LOC_Os07g47180.1 Alt: CT| frameshift_variant HIGH(snpEff)/frameshift_variant(CooVar) LOC_Os07g47180.2 Alt: CT| frameshift_variant HIGH(snpEff)/frameshift_variant(CooVar) The average chromatin accessibility score: 95.480; most accessible tissue: Minghui63 root, score: 98.932 |
| vg0728206472 (J) | chr07 | 28206472 | C | CTGTT | 55.90% | 23.38% | C -> CTGTT | NA |
LOC_Os07g47180.1 Alt: DEL/frameshift_variant(CooVar)
LOC_Os07g47180.2 Alt: DEL/frameshift_variant(CooVar) LOC_Os07g47180.1 Alt: CTGTT| frameshift_variant HIGH(snpEff)/frameshift_variant(CooVar) LOC_Os07g47180.2 Alt: CTGTT| frameshift_variant HIGH(snpEff)/frameshift_variant(CooVar) The average chromatin accessibility score: 95.467; most accessible tissue: Minghui63 root, score: 98.932 |
| vg0728206473 (J) | chr07 | 28206473 | C | CT | 55.90% | 23.40% | C -> CT | NA |
LOC_Os07g47180.1 Alt: DEL/frameshift_variant(CooVar)
LOC_Os07g47180.2 Alt: DEL/frameshift_variant(CooVar) LOC_Os07g47180.1 Alt: CT| frameshift_variant HIGH(snpEff)/frameshift_variant(CooVar) LOC_Os07g47180.2 Alt: CT| frameshift_variant HIGH(snpEff)/frameshift_variant(CooVar) The average chromatin accessibility score: 95.475; most accessible tissue: Minghui63 root, score: 98.950 |
| vg0728206486 (J) | chr07 | 28206486 | G | T | 56.00% | 23.38% | G -> T | NA |
LOC_Os07g47180.1 Alt: DEL/frameshift_variant(CooVar)
LOC_Os07g47180.2 Alt: DEL/frameshift_variant(CooVar) LOC_Os07g47180.1 Alt: T| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) LOC_Os07g47180.2 Alt: T| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) The average chromatin accessibility score: 95.207; most accessible tissue: Minghui63 root, score: 98.870 |
| vg0728206490 (J) | chr07 | 28206490 | C | T | 56.00% | 23.38% | C -> T | NA |
LOC_Os07g47180.1 Alt: DEL/frameshift_variant(CooVar)
LOC_Os07g47180.2 Alt: DEL/frameshift_variant(CooVar) LOC_Os07g47180.1 Alt: T| stop_gained HIGH(snpEff)/stop_gained(CooVar) LOC_Os07g47180.2 Alt: T| stop_gained HIGH(snpEff)/stop_gained(CooVar) The average chromatin accessibility score: 95.146; most accessible tissue: Minghui63 root, score: 98.879 |
| vg0728206519 (J) | chr07 | 28206519 | T | G | 33.30% | 17.56% | T -> G | NA |
LOC_Os07g47180.1 Alt: DEL/frameshift_variant(CooVar)
LOC_Os07g47180.2 Alt: DEL/frameshift_variant(CooVar) LOC_Os07g47180.1 Alt: G| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) LOC_Os07g47180.2 Alt: G| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) The average chromatin accessibility score: 94.973; most accessible tissue: Minghui63 root, score: 98.868 |
| vg0728207492 (J) | chr07 | 28207492 | G | A | 98.50% | 0.00% | G -> A | NA |
LOC_Os07g47180.1 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/benign(PolyPhen-2)
LOC_Os07g47180.2 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/benign(PolyPhen-2) The average chromatin accessibility score: 80.261; most accessible tissue: Minghui63 flag leaf, score: 91.886 |
| vg0728207497 (J) | chr07 | 28207497 | C | T | 87.60% | 0.00% | C -> T |
mr1272 (Ind_All); LR P-value: 9.87E-07;
mr1399 (Ind_All); LR P-value: 3.65E-07; mr1889 (Ind_All); LR P-value: 2.32E-09; mr1907 (Ind_All); LR P-value: 3.13E-10; mr1934 (Ind_All); LR P-value: 7.94E-09; mr1935 (Ind_All); LR P-value: 2.05E-09; mr1319_2 (All); LR P-value: 6.16E-10; mr1327_2 (All); LR P-value: 1.16E-09; mr1330_2 (All); LR P-value: 5.33E-14; mr1330_2 (Ind_All); LR P-value: 3.78E-07; mr1332_2 (Ind_All); LR P-value: 1.54E-06; mr1360_2 (All); LR P-value: 6.05E-06; mr1478_2 (Ind_All); LR P-value: 1.13E-06; mr1492_2 (All); LR P-value: 2.08E-06; mr1497_2 (All); LR P-value: 1.69E-06; mr1715_2 (Ind_All); LR P-value: 6.82E-11; mr1992_2 (All); LR P-value: 1.33E-06 |
LOC_Os07g47180.1 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar)
LOC_Os07g47180.2 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) The average chromatin accessibility score: 80.178; most accessible tissue: Minghui63 flag leaf, score: 92.011 |
| vg0728207588 (J) | chr07 | 28207588 | A | C | 87.50% | 0.00% | A -> C |
mr1272 (Ind_All); LR P-value: 9.87E-07;
mr1399 (Ind_All); LR P-value: 3.65E-07; mr1889 (Ind_All); LR P-value: 2.32E-09; mr1907 (Ind_All); LR P-value: 3.13E-10; mr1934 (Ind_All); LR P-value: 7.94E-09; mr1935 (Ind_All); LR P-value: 2.05E-09; mr1294_2 (All); LR P-value: 5.16E-06; mr1319_2 (All); LR P-value: 6.87E-10; mr1327_2 (All); LR P-value: 9.44E-09; mr1330_2 (All); LR P-value: 2.57E-13; mr1330_2 (Ind_All); LR P-value: 3.78E-07; mr1332_2 (Ind_All); LR P-value: 1.54E-06; mr1478_2 (Ind_All); LR P-value: 1.13E-06; mr1492_2 (All); LR P-value: 1.08E-06; mr1497_2 (All); LR P-value: 7.22E-07; mr1715_2 (Ind_All); LR P-value: 6.82E-11; mr1779_2 (All); LR P-value: 5.95E-06; mr1992_2 (All); LR P-value: 9.62E-07 |
LOC_Os07g47194.1 Alt: C| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os07g47194.3 Alt: C| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os07g47194.2 Alt: C| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os07g47180.1 Alt: C| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os07g47180.2 Alt: C| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 71.253; most accessible tissue: Minghui63 flag leaf, score: 87.594 |
| vg0728207819 (J) | chr07 | 28207819 | A | G | 87.60% | 0.00% | A -> G |
mr1272 (Ind_All); LR P-value: 8.59E-07;
mr1399 (Ind_All); LR P-value: 3.52E-07; mr1598 (Ind_All); LR P-value: 3.38E-06; mr1889 (Ind_All); LR P-value: 1.60E-09; mr1935 (Ind_All); LR P-value: 6.46E-09; mr1296_2 (Ind_All); LR P-value: 4.80E-06; mr1319_2 (All); LR P-value: 2.35E-10; mr1327_2 (All); LR P-value: 1.76E-09; mr1330_2 (All); LR P-value: 2.11E-14; mr1330_2 (Ind_All); LR P-value: 3.10E-07; mr1332_2 (Ind_All); LR P-value: 1.38E-06; mr1360_2 (All); LR P-value: 1.87E-06; mr1360_2 (Ind_All); LR P-value: 3.01E-06; mr1478_2 (Ind_All); LR P-value: 7.85E-07; mr1492_2 (All); LR P-value: 1.29E-06; mr1497_2 (All); LR P-value: 1.80E-06; mr1715_2 (Ind_All); LR P-value: 3.57E-11; mr1779_2 (All); LR P-value: 7.67E-06; mr1992_2 (All); LR P-value: 5.67E-07 |
LOC_Os07g47194.1 Alt: G| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os07g47194.3 Alt: G| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os07g47194.2 Alt: G| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os07g47180.1 Alt: G| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os07g47180.2 Alt: G| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 55.817; most accessible tissue: Callus, score: 76.947 |
| vg0728208418 (J) | chr07 | 28208418 | C | T | 98.90% | 0.00% | C -> T | NA |
LOC_Os07g47180.1 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar)
LOC_Os07g47180.2 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) The average chromatin accessibility score: 33.664; most accessible tissue: Callus, score: 48.185 |
| vg0728208589 (J) | chr07 | 28208589 | G | T | 87.60% | 0.00% | G -> T |
mr1272 (Ind_All); LR P-value: 8.59E-07;
mr1399 (Ind_All); LR P-value: 3.52E-07; mr1598 (Ind_All); LR P-value: 3.38E-06; mr1889 (Ind_All); LR P-value: 1.60E-09; mr1935 (Ind_All); LR P-value: 6.46E-09; mr1296_2 (Ind_All); LR P-value: 4.80E-06; mr1319_2 (All); LR P-value: 2.35E-10; mr1327_2 (All); LR P-value: 1.76E-09; mr1330_2 (All); LR P-value: 2.11E-14; mr1330_2 (Ind_All); LR P-value: 3.10E-07; mr1332_2 (Ind_All); LR P-value: 1.38E-06; mr1360_2 (All); LR P-value: 1.87E-06; mr1360_2 (Ind_All); LR P-value: 3.01E-06; mr1478_2 (Ind_All); LR P-value: 7.85E-07; mr1492_2 (All); LR P-value: 1.29E-06; mr1497_2 (All); LR P-value: 1.80E-06; mr1715_2 (Ind_All); LR P-value: 3.57E-11; mr1779_2 (All); LR P-value: 7.67E-06; mr1992_2 (All); LR P-value: 5.67E-07 |
LOC_Os07g47194.1 Alt: T| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os07g47194.3 Alt: T| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os07g47194.2 Alt: T| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os07g47180.1 Alt: T| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os07g47180.2 Alt: T| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 34.448; most accessible tissue: Callus, score: 57.429 |
| vg0728208708 (J) | chr07 | 28208708 | T | A | 87.50% | 0.00% | T -> A |
mr1272 (Ind_All); LR P-value: 8.59E-07;
mr1399 (Ind_All); LR P-value: 3.52E-07; mr1598 (Ind_All); LR P-value: 3.38E-06; mr1889 (Ind_All); LR P-value: 1.60E-09; mr1935 (Ind_All); LR P-value: 6.46E-09; mr1296_2 (Ind_All); LR P-value: 4.80E-06; mr1319_2 (All); LR P-value: 2.35E-10; mr1327_2 (All); LR P-value: 1.76E-09; mr1330_2 (All); LR P-value: 2.11E-14; mr1330_2 (Ind_All); LR P-value: 3.10E-07; mr1332_2 (Ind_All); LR P-value: 1.38E-06; mr1360_2 (All); LR P-value: 1.87E-06; mr1360_2 (Ind_All); LR P-value: 3.01E-06; mr1478_2 (Ind_All); LR P-value: 7.85E-07; mr1492_2 (All); LR P-value: 1.29E-06; mr1497_2 (All); LR P-value: 1.80E-06; mr1715_2 (Ind_All); LR P-value: 3.57E-11; mr1779_2 (All); LR P-value: 7.67E-06; mr1992_2 (All); LR P-value: 5.67E-07 |
LOC_Os07g47194.1 Alt: A| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os07g47194.3 Alt: A| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os07g47194.2 Alt: A| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os07g47180.1 Alt: A| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os07g47180.2 Alt: A| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 38.937; most accessible tissue: Callus, score: 81.060 |
| vg0728208773 (J) | chr07 | 28208773 | A | T | 99.20% | 0.00% | A -> T | NA |
LOC_Os07g47194.1 Alt: T| downstream_gene_variant MODIFIER(snpEff)
LOC_Os07g47194.3 Alt: T| downstream_gene_variant MODIFIER(snpEff) LOC_Os07g47194.2 Alt: T| downstream_gene_variant MODIFIER(snpEff) LOC_Os07g47180.1 Alt: T| intron_variant MODIFIER(snpEff) LOC_Os07g47180.2 Alt: T| intron_variant MODIFIER(snpEff) The average chromatin accessibility score: 39.800; most accessible tissue: Callus, score: 81.060 |
| vg0728208986 (J) | chr07 | 28208986 | A | G | 79.80% | 0.00% | A -> G |
mr1272 (Ind_All); LR P-value: 1.94E-06;
mr1291 (All); LR P-value: 2.43E-06; mr1399 (Ind_All); LR P-value: 1.20E-06; mr1598 (Ind_All); LR P-value: 1.72E-06; mr1889 (Ind_All); LR P-value: 2.70E-10; mr1907 (Ind_All); LR P-value: 1.63E-10; mr1934 (Ind_All); LR P-value: 4.50E-09; mr1935 (Ind_All); LR P-value: 1.29E-09; mr1296_2 (Ind_All); LR P-value: 2.93E-06; mr1330_2 (Ind_All); LR P-value: 1.68E-07; mr1332_2 (Ind_All); LR P-value: 4.38E-07; mr1360_2 (Ind_All); LR P-value: 1.35E-06; mr1478_2 (Ind_All); LR P-value: 7.65E-07; mr1598_2 (Ind_All); LR P-value: 2.98E-09; mr1715_2 (Ind_All); LR P-value: 1.65E-11 |
LOC_Os07g47180.1 Alt: G| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar)
LOC_Os07g47180.2 Alt: G| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) The average chromatin accessibility score: 43.638; most accessible tissue: Callus, score: 88.072 |
| vg0728209342 (J) | chr07 | 28209342 | G | A | 87.60% | 0.00% | G -> A |
mr1272 (Ind_All); LR P-value: 8.59E-07;
mr1399 (Ind_All); LR P-value: 3.52E-07; mr1598 (Ind_All); LR P-value: 3.38E-06; mr1889 (Ind_All); LR P-value: 1.60E-09; mr1935 (Ind_All); LR P-value: 6.46E-09; mr1296_2 (Ind_All); LR P-value: 4.80E-06; mr1319_2 (All); LR P-value: 2.35E-10; mr1327_2 (All); LR P-value: 1.76E-09; mr1330_2 (All); LR P-value: 2.11E-14; mr1330_2 (Ind_All); LR P-value: 3.10E-07; mr1332_2 (Ind_All); LR P-value: 1.38E-06; mr1360_2 (All); LR P-value: 1.87E-06; mr1360_2 (Ind_All); LR P-value: 3.01E-06; mr1478_2 (Ind_All); LR P-value: 7.85E-07; mr1492_2 (All); LR P-value: 1.29E-06; mr1497_2 (All); LR P-value: 1.80E-06; mr1715_2 (Ind_All); LR P-value: 3.57E-11; mr1779_2 (All); LR P-value: 7.67E-06; mr1992_2 (All); LR P-value: 5.67E-07 |
LOC_Os07g47194.1 Alt: A| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os07g47194.3 Alt: A| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os07g47194.2 Alt: A| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os07g47180.1 Alt: A| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os07g47180.2 Alt: A| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 60.754; most accessible tissue: Callus, score: 95.372 |
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