RiceVarMap2

Search for Variation information by Variation ID:

Flanking Sequence (100 bp) in Reference Genome:

TGCATAAGAAGTCTTCAATACTAAAAAGGAAAAAAAATACTGGCAGCGGTTCTTGCAAAGTGAGACAATTTAATTGCAAATCAAGGCAAGCAACGATGAA[TTT/TT]
TTTTTCTCTTAGATCCATGAATTCATTCCATGTAAGGATTCTTTTTTCGAACAGCAGTGTATAGGCCGGAGAGGGAGCTCAATTAGTCAAAATTCTGTAC

Reverse complement sequence

GTACAGAATTTTGACTAATTGAGCTCCCTCTCCGGCCTATACACTGCTGTTCGAAAAAAGAATCCTTACATGGAATGAATTCATGGATCTAAGAGAAAAA[AAA/AA]
TTCATCGTTGCTTGCCTTGATTTGCAATTAAATTGTCTCACTTTGCAAGAACCGCTGCCAGTATTTTTTTTCCTTTTTAGTATTGAAGACTTCTTATGCA

Allele Frequencies:

Search:

Populations	Population Size	Frequency of TTT(primary allele)	Frequency of TT(secondary allele)	Frequency of N	Frequency of DEL	Frequency of others Allele
All	774	75.20%	22.50%	2.97%	0.00%	NA
All Indica	492	65.20%	32.30%	3.66%	0.00%	NA
All Japonica	244	97.50%	1.20%	1.23%	0.00%	NA
Aus	7	0.00%	85.70%	14.29%	0.00%	NA
Indica I	492	65.20%	32.30%	3.66%	0.00%	NA
Indica II	215	0.00%	47.90%	4.19%	0.00%	NA
Indica III	21	85.70%	10.00%	4.76%	0.00%	NA
Indica Intermediate	190	71.60%	25.70%	3.68%	0.00%	NA
Temperate Japonica	189	99.50%	0.00%	0.53%	0.00%	NA
Tropical Japonica	36	86.10%	8.80%	5.56%	0.00%	NA
Japonica Intermediate	19	100.00%	0.00%	0.00%	0.00%	NA
VI/Aromatic	9	66.70%	33.30%	0.00%	0.00%	NA
Intermediate	231	74.50%	22.90%	3.46%	0.00%	NA

Showing 1 to 13 of 13 entries

Contact

Address: Room B111, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural university, Wuhan, 430070, China

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Search for Variation information by Variation ID:

Flanking Sequence (100 bp) in Reference Genome:

Reverse complement sequence

Allele Frequencies:

RiceVarMap v2.0

Tools

Blast

Design Primer by Variation ID

Design Primer by Region

Haplotype Network Analysis

Varitation Coordinate Convert

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