98 variations found. Os06g0247800/LOC_Os06g13820 (dynamin; putative; expressed), ranging from 7,661,690 bp to 7,670,035 bp (including 0 kb upstream and 0 kb downstream of the gene).
| Gene ID | Annotation |
|---|---|
| LOC_Os06g13820 | dynamin, putative, expressed; RAP ID: Os06g0247800; MSU ID: LOC_Os06g13820 |
The expression data is from the CREP database. And the expression value is log2-transformed. Move the mouse over the cells of the heat map to get detailed tissue information and expression values.
| Color | Explain | Details |
|---|---|---|
| red | High impact variants defined by snpEff | 'STOP_LOST', 'START_LOST', 'STOP_GAINED', 'FRAME_SHIFT' et. al., the details can be found at http://snpef f.sourceforge.net/SnpEff_manual.html#eff. |
| purple | 'Damaging' or 'probably damaging' non-synonymous SNPs defined by PolyPhen-2 | This is a qualitative result of nonsynonymous SNP annotation, where 'damaging' or 'probably damaging' means that the variant is more likely to affect protein function. Details can be found here. |
| Var ID | Chrom | Position | Primary Allele | Secondary Allele | Primary Allele Frequency | DEL Frequency | Var | GWAS Results | Effect |
|---|---|---|---|---|---|---|---|---|---|
| STR0607666512 (J) | chr06 | 7666512 | TT | T | 96.80% | 0.00% | TT -> T | NA |
|
| STR0607669876 (J) | chr06 | 7669876 | TT | TTT | 94.80% | 0.00% | TT -> TTT | NA |
|
| vg0607661701 (J) | chr06 | 7661701 | T | A | 98.40% | 0.00% | T -> A | NA |
LOC_Os06g13820.1 Alt: A| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os06g13820.2 Alt: A| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 99.739; most accessible tissue: Zhenshan97 root, score: 99.883 |
| vg0607661715 (J) | chr06 | 7661715 | ATC | ATCTC | 84.40% | 0.00% | ATC -> ATCTC,A | NA |
LOC_Os06g13820.1 Alt: A| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os06g13820.2 Alt: A| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g13820.1 Alt: ATCTC| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g13820.2 Alt: ATCTC| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 99.739; most accessible tissue: Zhenshan97 root, score: 99.875 |
| vg0607661762 (J) | chr06 | 7661762 | C | T | 97.20% | 0.00% | C -> T | NA |
LOC_Os06g13820.1 Alt: T| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os06g13820.2 Alt: T| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 99.710; most accessible tissue: Zhenshan97 flower, score: 99.842 |
| vg0607661813 (J) | chr06 | 7661813 | C | T | 99.60% | 0.00% | C -> T | NA |
LOC_Os06g13820.1 Alt: T| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os06g13820.2 Alt: T| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 99.572; most accessible tissue: Zhenshan97 flower, score: 99.750 |
| vg0607661883 (J) | chr06 | 7661883 | C | T | 81.20% | 0.00% | C -> T |
LOC_Os06g13820.1 Alt: T| 5_prime_UTR_premature_start_codon_gain_variant LOW(snpEff)/silent_mutation(CooVar)
LOC_Os06g13820.2 Alt: T| 5_prime_UTR_premature_start_codon_gain_variant LOW(snpEff)/silent_mutation(CooVar) LOC_Os06g13820.1 Alt: T| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g13820.2 Alt: T| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 97.953; most accessible tissue: Zhenshan97 flower, score: 99.606 |
|
| vg0607661887 (J) | chr06 | 7661887 | C | A | 98.10% | 0.00% | C -> A | NA |
LOC_Os06g13820.1 Alt: A| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os06g13820.2 Alt: A| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 97.926; most accessible tissue: Zhenshan97 flower, score: 99.584 |
| vg0607661935 (J) | chr06 | 7661935 | A | G | 75.60% | 0.00% | A -> G |
LOC_Os06g13820.1 Alt: G| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os06g13820.2 Alt: G| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 98.024; most accessible tissue: Zhenshan97 panicle, score: 99.325 |
|
| vg0607662101 (J) | chr06 | 7662101 | G | A | 98.90% | 0.00% | G -> A | NA |
LOC_Os06g13820.1 Alt: A| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os06g13820.2 Alt: A| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 92.916; most accessible tissue: Zhenshan97 flag leaf, score: 98.964 |
| vg0607662107 (J) | chr06 | 7662107 | G | A | 98.30% | 0.00% | G -> A | NA |
LOC_Os06g13820.1 Alt: A| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os06g13820.2 Alt: A| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 92.891; most accessible tissue: Zhenshan97 flag leaf, score: 98.946 |
| vg0607662136 (J) | chr06 | 7662136 | G | T | 98.30% | 0.00% | G -> T | NA |
LOC_Os06g13820.1 Alt: T| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os06g13820.2 Alt: T| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 92.084; most accessible tissue: Zhenshan97 flag leaf, score: 98.429 |
| vg0607662157 (J) | chr06 | 7662157 | T | C | 99.60% | 0.00% | T -> C | NA |
LOC_Os06g13820.1 Alt: C| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os06g13820.2 Alt: C| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 91.842; most accessible tissue: Zhenshan97 flag leaf, score: 98.258 |
| vg0607662158 (J) | chr06 | 7662158 | G | T | 99.60% | 0.00% | G -> T | NA |
LOC_Os06g13820.1 Alt: T| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os06g13820.2 Alt: T| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 91.842; most accessible tissue: Zhenshan97 flag leaf, score: 98.258 |
| vg0607662193 (J) | chr06 | 7662193 | C | T | 76.70% | 0.00% | C -> T |
LOC_Os06g13820.1 Alt: T| splice_region_variant&intron_variant LOW(snpEff)/silent_mutation(CooVar)
LOC_Os06g13820.2 Alt: T| splice_region_variant&intron_variant LOW(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 95.373; most accessible tissue: Zhenshan97 flag leaf, score: 98.150 |
|
| vg0607662229 (J) | chr06 | 7662229 | C | T | 95.60% | 0.00% | C -> T |
LOC_Os06g13820.1 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar)
LOC_Os06g13820.2 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) The average chromatin accessibility score: 95.398; most accessible tissue: Zhenshan97 flag leaf, score: 98.271 |
|
| vg0607662261 (J) | chr06 | 7662261 | GCTACTA | GCTACTA CTA | 93.80% | 0.00% | GCTACTA -> GCTACTACTA ,GCTA,GCTA CTACTACTA, G | NA |
LOC_Os06g13820.1 Alt: G| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os06g13820.2 Alt: G| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g13820.1 Alt: GCTA| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g13820.2 Alt: GCTA| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g13820.1 Alt: GCTACTACTACTA| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g13820.2 Alt: GCTACTACTACTA| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g13820.1 Alt: GCTACTACTA| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g13820.2 Alt: GCTACTACTA| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 95.055; most accessible tissue: Zhenshan97 flag leaf, score: 98.158 |
| vg0607662330 (J) | chr06 | 7662330 | T | TG | 82.10% | 1.95% | T -> TG,TGGG,TG G | NA |
N Alt: DEL/silent_mutation(CooVar)
LOC_Os06g13820.1 Alt: TGG| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g13820.2 Alt: TGG| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g13820.1 Alt: TGGG| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g13820.2 Alt: TGGG| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g13820.1 Alt: TG| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g13820.2 Alt: TG| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 93.668; most accessible tissue: Zhenshan97 flag leaf, score: 97.712 |
| vg0607662335 (J) | chr06 | 7662335 | GT | G | 99.80% | 0.00% | GT -> G | NA |
LOC_Os06g13820.1 Alt: G| intron_variant MODIFIER(snpEff)
LOC_Os06g13820.2 Alt: G| intron_variant MODIFIER(snpEff) The average chromatin accessibility score: 93.375; most accessible tissue: Zhenshan97 flag leaf, score: 97.589 |
| vg0607662336 (J) | chr06 | 7662336 | T | G | 76.00% | 1.93% | T -> G |
LOC_Os06g13820.1 Alt: G| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os06g13820.2 Alt: G| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) N Alt: DEL/silent_mutation(CooVar) The average chromatin accessibility score: 93.373; most accessible tissue: Zhenshan97 flag leaf, score: 97.589 |
|
| vg0607662338 (J) | chr06 | 7662338 | GT | G | 99.80% | 0.00% | GT -> G | NA |
LOC_Os06g13820.1 Alt: G| intron_variant MODIFIER(snpEff)
LOC_Os06g13820.2 Alt: G| intron_variant MODIFIER(snpEff) The average chromatin accessibility score: 93.357; most accessible tissue: Zhenshan97 flag leaf, score: 97.584 |
| vg0607662339 (J) | chr06 | 7662339 | T | G | 98.90% | 0.00% | T -> G | NA |
LOC_Os06g13820.1 Alt: G| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os06g13820.2 Alt: G| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 93.356; most accessible tissue: Zhenshan97 flag leaf, score: 97.584 |
| vg0607662391 (J) | chr06 | 7662391 | A | G | 71.50% | 0.00% | A -> G |
LOC_Os06g13820.1 Alt: G| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar)
LOC_Os06g13820.2 Alt: G| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) The average chromatin accessibility score: 92.570; most accessible tissue: Zhenshan97 flag leaf, score: 97.343 |
|
| vg0607662439 (J) | chr06 | 7662439 | C | G | 99.80% | 0.00% | C -> G | NA |
LOC_Os06g13820.1 Alt: G| missense_variant MODERATE(snpEff)
LOC_Os06g13820.2 Alt: G| missense_variant MODERATE(snpEff) The average chromatin accessibility score: 93.331; most accessible tissue: Zhenshan97 flag leaf, score: 97.028 |
| vg0607662494 (J) | chr06 | 7662494 | G | A | 75.60% | 0.00% | G -> A |
LOC_Os06g13820.1 Alt: A| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os06g13820.2 Alt: A| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 91.455; most accessible tissue: Zhenshan97 flag leaf, score: 94.888 |
Address: Room B111, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural university, Wuhan, 430070, China
Comments or Questions? Please contact us. Our website: http://xielab.ncpgr.cn/