Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


CCCTTTGCTTGATAATCAATCTTTCCATTATTTATATTTTGTAAAGATAAGATAATTTTATGGCTACACAGTTACACTATGGAATGTTGAGCCTTGTCAA[TT/T]
TTTTTTAACAATACTGGCAGAATGGAAAGGCAACGCCGTGAGGATGAATTAAAAAATCGATCCTCCAAGAAACCACAGGATGCTGACCAACCCATGGGAA

Reverse complement sequence

TTCCCATGGGTTGGTCAGCATCCTGTGGTTTCTTGGAGGATCGATTTTTTAATTCATCCTCACGGCGTTGCCTTTCCATTCTGCCAGTATTGTTAAAAAA[AA/A]
TTGACAAGGCTCAACATTCCATAGTGTAACTGTGTAGCCATAAAATTATCTTATCTTTACAAAATATAAATAATGGAAAGATTGATTATCAAGCAAAGGG

Allele Frequencies:

Populations Population SizeFrequency of TT(primary allele) Frequency of T(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 96.80% 2.30% 0.90% 0.00% NA
All Indica  492 99.60% 0.00% 0.41% 0.00% NA
All Japonica  244 91.00% 7.10% 2.05% 0.00% NA
Aus  7 100.00% 0.00% 0.00% 0.00% NA
Indica I  492 99.60% 0.00% 0.41% 0.00% NA
Indica II  215 99.50% 0.00% 0.47% 0.00% NA
Indica III  21 100.00% 0.00% 0.00% 0.00% NA
Indica Intermediate  190 99.50% 0.00% 0.53% 0.00% NA
Temperate Japonica  189 98.90% 0.00% 1.06% 0.00% NA
Tropical Japonica  36 47.20% 48.50% 8.33% 0.00% NA
Japonica Intermediate  19 94.70% 5.30% 0.00% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 98.70% 0.90% 0.43% 0.00% NA