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Detailed information for vg1217693047:

Variant ID: vg1217693047 (JBrowse)	Variation Type: SNP
Chromosome: chr12	Position: 17693047
Reference Allele: T	Alternative Allele: G
Primary Allele: T	Secondary Allele: G

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 1.00, G: 0.00, others allele: 0.00, population size: 213. )

Flanking Sequence (100 bp) in Reference Genome:

GAGTAAGGATAAGCACCCTAATTGCAGGTACACGTTTGGGCCGGAAAAGTAGACGTTCCAGCACAGGTAATGAGAAAGCAGCTGTCTATAAAGAGTTCAA[T/G]
TAAGCTAAAGATAGATACTGATTCAAAATGCTCCCAAAGGGAAGTTTTTGTTAATTATATATACCTTCCCAGATCCTGTTATAGCACTGCCACATATATC

Reverse complement sequence

GATATATGTGGCAGTGCTATAACAGGATCTGGGAAGGTATATATAATTAACAAAAACTTCCCTTTGGGAGCATTTTGAATCAGTATCTATCTTTAGCTTA[A/C]
TTGAACTCTTTATAGACAGCTGCTTTCTCATTACCTGTGCTGGAACGTCTACTTTTCCGGCCCAAACGTGTACCTGCAATTAGGGTGCTTATCCTTACTC

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: