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Detailed information for vg1127723883:

Variant ID: vg1127723883 (JBrowse)Variation Type: SNP
Chromosome: chr11Position: 27723883
Reference Allele: CAlternative Allele: T
Primary Allele: CSecondary Allele: T

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 0.95, T: 0.03, others allele: 0.00, population size: 68. )

Flanking Sequence (100 bp) in Reference Genome:


AACTTGGCCTAGGTTGTTTTTTTTGGATGGCGTAGGTTGTTTTTTTTTTTTTTATGGAGGGAGTACGTCACATTAAAGTGCCCAACAGCTGCTCAAATGT[C/T]
CCCGTCGTCTATTCTGAACAGAACTTGTGGAATGGGTGGATGGGCATAAAGACAATGATTTTGACCAAACGCAGAGGGGAAAATATCGGACTTTGGAAGC

Reverse complement sequence

GCTTCCAAAGTCCGATATTTTCCCCTCTGCGTTTGGTCAAAATCATTGTCTTTATGCCCATCCACCCATTCCACAAGTTCTGTTCAGAATAGACGACGGG[G/A]
ACATTTGAGCAGCTGTTGGGCACTTTAATGTGACGTACTCCCTCCATAAAAAAAAAAAAAACAACCTACGCCATCCAAAAAAAACAACCTAGGCCAAGTT

Allele Frequencies:

Allele Effect: