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Detailed information for vg1021201778:

Variant ID: vg1021201778 (JBrowse)Variation Type: SNP
Chromosome: chr10Position: 21201778
Reference Allele: CAlternative Allele: T
Primary Allele: TSecondary Allele: C

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 0.99, C: 0.01, G: 0.00, others allele: 0.00, population size: 263. )

Flanking Sequence (100 bp) in Reference Genome:


TTAAGTTTGTCACCTATTTTGATTTTTCCCACCTCCAAGTGCTGGAAGGATTGGGAAAACCGACGGCAAATTTAGTTCCTACTATAGGAGCACGGCAAAT[C/T]
ACGTAGACAAACTTGTATTGAGTCAAGTAGGCTTTGTAAGATCATAGTTGATTGCATTCAACAATTCAGCATGCCATCATGTTGTAAGAAAAGTTTCTAA

Reverse complement sequence

TTAGAAACTTTTCTTACAACATGATGGCATGCTGAATTGTTGAATGCAATCAACTATGATCTTACAAAGCCTACTTGACTCAATACAAGTTTGTCTACGT[G/A]
ATTTGCCGTGCTCCTATAGTAGGAACTAAATTTGCCGTCGGTTTTCCCAATCCTTCCAGCACTTGGAGGTGGGAAAAATCAAAATAGGTGACAAACTTAA

Allele Frequencies:

Allele Effect: