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Detailed information for vg1016576326:

Variant ID: vg1016576326 (JBrowse)Variation Type: SNP
Chromosome: chr10Position: 16576326
Reference Allele: AAlternative Allele: G
Primary Allele: GSecondary Allele: A

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 0.99, A: 0.02, others allele: 0.00, population size: 227. )

Flanking Sequence (100 bp) in Reference Genome:


CATCTTTGAACGGTGTATTAGTAATATCTCCTTAGAAGGTTTTGCAGGGCTTCCCATGCATGATACATCGCGAAAATTTGGCCTTGGCATTACTTATTTG[A/G]
TGGGGAAATTATGTGCACTATAAGGAGGAATGGAGTATTATTCTAGCTAAACATCTAATTGACCGGAAGGCTATTACTATGTTAATTAGGATATTTGTCA

Reverse complement sequence

TGACAAATATCCTAATTAACATAGTAATAGCCTTCCGGTCAATTAGATGTTTAGCTAGAATAATACTCCATTCCTCCTTATAGTGCACATAATTTCCCCA[T/C]
CAAATAAGTAATGCCAAGGCCAAATTTTCGCGATGTATCATGCATGGGAAGCCCTGCAAAACCTTCTAAGGAGATATTACTAATACACCGTTCAAAGATG

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: