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Detailed information for vg0702985216:

Variant ID: vg0702985216 (JBrowse)	Variation Type: SNP
Chromosome: chr07	Position: 2985216
Reference Allele: T	Alternative Allele: G
Primary Allele: T	Secondary Allele: G

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 0.72, T: 0.28, others allele: 0.00, population size: 236. )

Flanking Sequence (100 bp) in Reference Genome:

TGATCGACATCGGTTTGTCGTTTCGCAAATGGTAGAAATGATGATGGGTTTTTGATACTGAATTGAGCCTCTGAGCGAATTCTGATGAGTAGGAAAAGCA[T/G]
CTTCATAATGAAGGTCCTAAATCTCGTATGTGAATTCCTGTTGATAAAGAAAATGATGGTTCACTTGGAACTATACTTGTGCAAAAGAATCCTATTCTTT

Reverse complement sequence

AAAGAATAGGATTCTTTTGCACAAGTATAGTTCCAAGTGAACCATCATTTTCTTTATCAACAGGAATTCACATACGAGATTTAGGACCTTCATTATGAAG[A/C]
TGCTTTTCCTACTCATCAGAATTCGCTCAGAGGCTCAATTCAGTATCAAAAACCCATCATCATTTCTACCATTTGCGAAACGACAAACCGATGTCGATCA

Allele Frequencies:

Allele Effect: