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Detailed information for vg0602358935:

Variant ID: vg0602358935 (JBrowse)Variation Type: SNP
Chromosome: chr06Position: 2358935
Reference Allele: TAlternative Allele: G
Primary Allele: GSecondary Allele: T

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 0.91, T: 0.10, others allele: 0.00, population size: 250. )

Flanking Sequence (100 bp) in Reference Genome:


CGGGTAGCAAATGGTTCACTTCATAGCCAAAGCTCCAACTGGAGGATAAATTTTGCCTTCACTAGCTAATGGTCAGTGGTAAATATGATTGGTTGGTGAT[T/G]
ATCAGAAATTTCAGCTGTGTACCCACTTGCCAGGCATTTTCAATAATGTTTTTGAGGAAAAGGCTGTATAATCGTATACATAAGTATTGATGTTGTCCAT

Reverse complement sequence

ATGGACAACATCAATACTTATGTATACGATTATACAGCCTTTTCCTCAAAAACATTATTGAAAATGCCTGGCAAGTGGGTACACAGCTGAAATTTCTGAT[A/C]
ATCACCAACCAATCATATTTACCACTGACCATTAGCTAGTGAAGGCAAAATTTATCCTCCAGTTGGAGCTTTGGCTATGAAGTGAACCATTTGCTACCCG

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: