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Detailed information for vg0514784961:

Variant ID: vg0514784961 (JBrowse)Variation Type: INDEL
Chromosome: chr05Position: 14784961
Reference Allele: GAAAlternative Allele: G
Primary Allele: GAASecondary Allele: G

Inferred Ancestral Allele : GAA (evidence from allele frequency in Oryza rufipogon: GAA: 0.99, G: 0.01, others allele: 0.00, population size: 286. )

Flanking Sequence (100 bp) in Reference Genome:


TCAACTGGTTCAGTATCTCACAGGACAGTCCGTTAACAATCAAATTAACTGTTATAAACTCCAACAATTTTCCCTATAAAACATGAGAACAGAAGCTTGA[GAA/G]
GAATACTAAACGGTAGTTTGGTCTTATCGGCCATCTGGATGCATCATCTCTGAGAAGACAGCCTTTTGTCCAGAGATGCTCATAGTTGAGCGGGATGATG

Reverse complement sequence

CATCATCCCGCTCAACTATGAGCATCTCTGGACAAAAGGCTGTCTTCTCAGAGATGATGCATCCAGATGGCCGATAAGACCAAACTACCGTTTAGTATTC[TTC/C]
TCAAGCTTCTGTTCTCATGTTTTATAGGGAAAATTGTTGGAGTTTATAACAGTTAATTTGATTGTTAACGGACTGTCCTGTGAGATACTGAACCAGTTGA

Allele Frequencies:

Allele Effect: