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Detailed information for vg0514784945:

Variant ID: vg0514784945 (JBrowse)Variation Type: SNP
Chromosome: chr05Position: 14784945
Reference Allele: GAlternative Allele: T
Primary Allele: GSecondary Allele: T

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 1.00, T: 0.00, others allele: 0.00, population size: 286. )

Flanking Sequence (100 bp) in Reference Genome:


GGGACACACAGATTAATCAACTGGTTCAGTATCTCACAGGACAGTCCGTTAACAATCAAATTAACTGTTATAAACTCCAACAATTTTCCCTATAAAACAT[G/T]
AGAACAGAAGCTTGAGAAGAATACTAAACGGTAGTTTGGTCTTATCGGCCATCTGGATGCATCATCTCTGAGAAGACAGCCTTTTGTCCAGAGATGCTCA

Reverse complement sequence

TGAGCATCTCTGGACAAAAGGCTGTCTTCTCAGAGATGATGCATCCAGATGGCCGATAAGACCAAACTACCGTTTAGTATTCTTCTCAAGCTTCTGTTCT[C/A]
ATGTTTTATAGGGAAAATTGTTGGAGTTTATAACAGTTAATTTGATTGTTAACGGACTGTCCTGTGAGATACTGAACCAGTTGATTAATCTGTGTGTCCC

Allele Frequencies:

Allele Effect: