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Detailed information for vg0514784788:

Variant ID: vg0514784788 (JBrowse)Variation Type: SNP
Chromosome: chr05Position: 14784788
Reference Allele: AAlternative Allele: C
Primary Allele: ASecondary Allele: C

Inferred Ancestral Allele : A (evidence from allele frequency in Oryza rufipogon: A: 0.99, others allele: 0.00, population size: 254. )

Flanking Sequence (100 bp) in Reference Genome:


AAAAAGGGTAAAACAAACTTCATATGATTAGGACATCTTCAGAATCATGCATACAAATGGCGTCCTCGTTGTAGTACAGTAGTTACTAATTAGTCCGTGT[A/C]
CTACAGAAGATTATTCCAGTCTCTGGATTGTAAGGAAGGTAAACAAGAGTGTACGTGGGACACACAGATTAATCAACTGGTTCAGTATCTCACAGGACAG

Reverse complement sequence

CTGTCCTGTGAGATACTGAACCAGTTGATTAATCTGTGTGTCCCACGTACACTCTTGTTTACCTTCCTTACAATCCAGAGACTGGAATAATCTTCTGTAG[T/G]
ACACGGACTAATTAGTAACTACTGTACTACAACGAGGACGCCATTTGTATGCATGATTCTGAAGATGTCCTAATCATATGAAGTTTGTTTTACCCTTTTT

Allele Frequencies:

Allele Effect: