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Detailed information for vg0430915974:

Variant ID: vg0430915974 (JBrowse)	Variation Type: SNP
Chromosome: chr04	Position: 30915974
Reference Allele: C	Alternative Allele: G
Primary Allele: C	Secondary Allele: G

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 0.90, G: 0.09, others allele: 0.00, population size: 309. )

Flanking Sequence (100 bp) in Reference Genome:

AGCTGGAGCAATGTCAAATTTGAGCTACATCAACAAACAAGGGGTGTCAGAGAAGAAACTAAAGGCACAGAAAGCAGCAGTAACCATATAAAACTGCATA[C/G]
CTTGACAATATGATACATCACATCCTTGTTTTTCTCTGGAACACGTCTCCAATCTTGATGTGTCAGAGGTGCCAATATTCCGTCACGTGCTAATGCACCC

Reverse complement sequence

GGGTGCATTAGCACGTGACGGAATATTGGCACCTCTGACACATCAAGATTGGAGACGTGTTCCAGAGAAAAACAAGGATGTGATGTATCATATTGTCAAG[G/C]
TATGCAGTTTTATATGGTTACTGCTGCTTTCTGTGCCTTTAGTTTCTTCTCTGACACCCCTTGTTTGTTGATGTAGCTCAAATTTGACATTGCTCCAGCT

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: