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Detailed information for vg0430915671:

Variant ID: vg0430915671 (JBrowse)	Variation Type: SNP
Chromosome: chr04	Position: 30915671
Reference Allele: G	Alternative Allele: T
Primary Allele: G	Secondary Allele: T

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 1.00, others allele: 0.00, population size: 345. )

Flanking Sequence (100 bp) in Reference Genome:

ACATTTGCCCGACAAGCTTTATTTCGACTACTCACAGCCTGATCAAAGATAAAGTTACCAATCATTTAACAAGCCTGCCAAATTGCAAACAAGATGGCAA[G/T]
AAAATAGAATGGTCGGTGTTACCTTCGCTTTTTCCGTACCCCAATATGCAACTAAATATTGCCACTGTTCCTTGAGAACGCGAGGATTTTGATCAGCAAG

Reverse complement sequence

CTTGCTGATCAAAATCCTCGCGTTCTCAAGGAACAGTGGCAATATTTAGTTGCATATTGGGGTACGGAAAAAGCGAAGGTAACACCGACCATTCTATTTT[C/A]
TTGCCATCTTGTTTGCAATTTGGCAGGCTTGTTAAATGATTGGTAACTTTATCTTTGATCAGGCTGTGAGTAGTCGAAATAAAGCTTGTCGGGCAAATGT

Allele Frequencies:

Allele Effect: