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Detailed information for vg0430914479:

Variant ID: vg0430914479 (JBrowse)Variation Type: SNP
Chromosome: chr04Position: 30914479
Reference Allele: TAlternative Allele: G
Primary Allele: TSecondary Allele: G

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 1.00, G: 0.00, others allele: 0.00, population size: 313. )

Flanking Sequence (100 bp) in Reference Genome:


GGCAGAAGCTGAGAAACCCAACTTTTCTATATTCTCAGAAACTGGCTACCAATTAACTGCTTCTCAGAATCTCAAGCTTCACTAAACACGCCCAAAATCA[T/G]
TTCACAGGAAGGGAAATGCGAAGTGAAGTAGTTCTAGTCAGTGTAAACAAAACAGAAGAGAGTATCCTGTTACAGTAGCCAATAAAACAGAAGAGTACAA

Reverse complement sequence

TTGTACTCTTCTGTTTTATTGGCTACTGTAACAGGATACTCTCTTCTGTTTTGTTTACACTGACTAGAACTACTTCACTTCGCATTTCCCTTCCTGTGAA[A/C]
TGATTTTGGGCGTGTTTAGTGAAGCTTGAGATTCTGAGAAGCAGTTAATTGGTAGCCAGTTTCTGAGAATATAGAAAAGTTGGGTTTCTCAGCTTCTGCC

Allele Frequencies:

Allele Effect: