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Detailed information for vg0430914436:

Variant ID: vg0430914436 (JBrowse)	Variation Type: SNP
Chromosome: chr04	Position: 30914436
Reference Allele: T	Alternative Allele: C
Primary Allele: T	Secondary Allele: C

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 0.99, C: 0.00, others allele: 0.00, population size: 281. )

Flanking Sequence (100 bp) in Reference Genome:

AAGTTGTAGATATAGAATCCAGAAAATGAACTATAAGCTCGAAGGCAGAAGCTGAGAAACCCAACTTTTCTATATTCTCAGAAACTGGCTACCAATTAAC[T/C]
GCTTCTCAGAATCTCAAGCTTCACTAAACACGCCCAAAATCATTTCACAGGAAGGGAAATGCGAAGTGAAGTAGTTCTAGTCAGTGTAAACAAAACAGAA

Reverse complement sequence

TTCTGTTTTGTTTACACTGACTAGAACTACTTCACTTCGCATTTCCCTTCCTGTGAAATGATTTTGGGCGTGTTTAGTGAAGCTTGAGATTCTGAGAAGC[A/G]
GTTAATTGGTAGCCAGTTTCTGAGAATATAGAAAAGTTGGGTTTCTCAGCTTCTGCCTTCGAGCTTATAGTTCATTTTCTGGATTCTATATCTACAACTT

Allele Frequencies:

Allele Effect: