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Detailed information for vg0430914408:

Variant ID: vg0430914408 (JBrowse)	Variation Type: SNP
Chromosome: chr04	Position: 30914408
Reference Allele: T	Alternative Allele: G,A
Primary Allele: T	Secondary Allele: G

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 0.94, T: 0.06, others allele: 0.00, population size: 236. )

Flanking Sequence (100 bp) in Reference Genome:

TAGTCTATGTTTTGGTACAGATTCTGAGAAGTTGTAGATATAGAATCCAGAAAATGAACTATAAGCTCGAAGGCAGAAGCTGAGAAACCCAACTTTTCTA[T/G,A]
ATTCTCAGAAACTGGCTACCAATTAACTGCTTCTCAGAATCTCAAGCTTCACTAAACACGCCCAAAATCATTTCACAGGAAGGGAAATGCGAAGTGAAGT

Reverse complement sequence

ACTTCACTTCGCATTTCCCTTCCTGTGAAATGATTTTGGGCGTGTTTAGTGAAGCTTGAGATTCTGAGAAGCAGTTAATTGGTAGCCAGTTTCTGAGAAT[A/C,T]
TAGAAAAGTTGGGTTTCTCAGCTTCTGCCTTCGAGCTTATAGTTCATTTTCTGGATTCTATATCTACAACTTCTCAGAATCTGTACCAAAACATAGACTA

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: