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Detailed information for vg0430914304:

Variant ID: vg0430914304 (JBrowse)	Variation Type: SNP
Chromosome: chr04	Position: 30914304
Reference Allele: T	Alternative Allele: C
Primary Allele: T	Secondary Allele: C

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 0.74, T: 0.25, others allele: 0.00, population size: 232. )

Flanking Sequence (100 bp) in Reference Genome:

ACTCGTAGTACAATTAGAAAACACAAGGTATAACCCTATAGAGAGTATGTTTGGGGGAGTTTCTAGCTGCTGCAACTTCTCCCATAACCAAAAGCTCCCT[T/C]
AAATAGTCTATGTTTTGGTACAGATTCTGAGAAGTTGTAGATATAGAATCCAGAAAATGAACTATAAGCTCGAAGGCAGAAGCTGAGAAACCCAACTTTT

Reverse complement sequence

AAAAGTTGGGTTTCTCAGCTTCTGCCTTCGAGCTTATAGTTCATTTTCTGGATTCTATATCTACAACTTCTCAGAATCTGTACCAAAACATAGACTATTT[A/G]
AGGGAGCTTTTGGTTATGGGAGAAGTTGCAGCAGCTAGAAACTCCCCCAAACATACTCTCTATAGGGTTATACCTTGTGTTTTCTAATTGTACTACGAGT

Allele Frequencies:

Allele Effect: