Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Detailed information for vg0421624081:

Variant ID: vg0421624081 (JBrowse)Variation Type: SNP
Chromosome: chr04Position: 21624081
Reference Allele: AAlternative Allele: G
Primary Allele: ASecondary Allele: G

Inferred Ancestral Allele : A (evidence from allele frequency in Oryza rufipogon: A: 0.99, others allele: 0.00, population size: 318. )

Flanking Sequence (100 bp) in Reference Genome:


AGTGGCACGTACCTTGAAATAACTGTTATCAAACTTAAGCCATTCAGCTGTCCACGATTGCCCACCAGGTGCACCAGGGCCATTCTTCTGAAAAAGTAAG[A/G]
AAAAAAAGGTGAAAAAGCTCAAGATTTGTCCAATCCAGTCTAACCATAAAGACAAATGCACTTGGAGTTGATGTTGCTTCATGGAGTTGCAGAGGCGGCA

Reverse complement sequence

TGCCGCCTCTGCAACTCCATGAAGCAACATCAACTCCAAGTGCATTTGTCTTTATGGTTAGACTGGATTGGACAAATCTTGAGCTTTTTCACCTTTTTTT[T/C]
CTTACTTTTTCAGAAGAATGGCCCTGGTGCACCTGGTGGGCAATCGTGGACAGCTGAATGGCTTAAGTTTGATAACAGTTATTTCAAGGTACGTGCCACT

Allele Frequencies:

Allele Effect: