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Detailed information for vg0421623860:

Variant ID: vg0421623860 (JBrowse)	Variation Type: SNP
Chromosome: chr04	Position: 21623860
Reference Allele: T	Alternative Allele: C
Primary Allele: T	Secondary Allele: C

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 0.91, C: 0.08, others allele: 0.00, population size: 259. )

Flanking Sequence (100 bp) in Reference Genome:

CCTGACATATCCTAGTACGAGATTGGTTTATTTCGGGAAGTGAGAGTACAGTTTAAGCATTATTCACCTTGAATGTTGGGTCCTCAAATAATGCAGCATC[T/C]
GTAGGCAAGACCAGGAGATCCTGATCTCTTTTCTCTTTTATCTCCTGCAGTATTGCCACCAGGCACCAGCTCACATCATGCAAAATCATATGAATCATCC

Reverse complement sequence

GGATGATTCATATGATTTTGCATGATGTGAGCTGGTGCCTGGTGGCAATACTGCAGGAGATAAAAGAGAAAAGAGATCAGGATCTCCTGGTCTTGCCTAC[A/G]
GATGCTGCATTATTTGAGGACCCAACATTCAAGGTGAATAATGCTTAAACTGTACTCTCACTTCCCGAAATAAACCAATCTCGTACTAGGATATGTCAGG

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: