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Detailed information for vg0421623845:

Variant ID: vg0421623845 (JBrowse)	Variation Type: SNP
Chromosome: chr04	Position: 21623845
Reference Allele: A	Alternative Allele: C
Primary Allele: A	Secondary Allele: C

Inferred Ancestral Allele : A (evidence from allele frequency in Oryza rufipogon: A: 0.99, others allele: 0.00, population size: 354. )

Flanking Sequence (100 bp) in Reference Genome:

CAATTTTCAAATGATCCTGACATATCCTAGTACGAGATTGGTTTATTTCGGGAAGTGAGAGTACAGTTTAAGCATTATTCACCTTGAATGTTGGGTCCTC[A/C]
AATAATGCAGCATCTGTAGGCAAGACCAGGAGATCCTGATCTCTTTTCTCTTTTATCTCCTGCAGTATTGCCACCAGGCACCAGCTCACATCATGCAAAA

Reverse complement sequence

TTTTGCATGATGTGAGCTGGTGCCTGGTGGCAATACTGCAGGAGATAAAAGAGAAAAGAGATCAGGATCTCCTGGTCTTGCCTACAGATGCTGCATTATT[T/G]
GAGGACCCAACATTCAAGGTGAATAATGCTTAAACTGTACTCTCACTTCCCGAAATAAACCAATCTCGTACTAGGATATGTCAGGATCATTTGAAAATTG

Allele Frequencies:

Allele Effect: