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Detailed information for vg0421623799:

Variant ID: vg0421623799 (JBrowse)	Variation Type: SNP
Chromosome: chr04	Position: 21623799
Reference Allele: G	Alternative Allele: C
Primary Allele: G	Secondary Allele: C

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 1.00, others allele: 0.00, population size: 304. )

Flanking Sequence (100 bp) in Reference Genome:

CCTGAATGTGCGGTGAATTCTCAGACAGTTAGTTCAATAATTATTTCAATTTTCAAATGATCCTGACATATCCTAGTACGAGATTGGTTTATTTCGGGAA[G/C]
TGAGAGTACAGTTTAAGCATTATTCACCTTGAATGTTGGGTCCTCAAATAATGCAGCATCTGTAGGCAAGACCAGGAGATCCTGATCTCTTTTCTCTTTT

Reverse complement sequence

AAAAGAGAAAAGAGATCAGGATCTCCTGGTCTTGCCTACAGATGCTGCATTATTTGAGGACCCAACATTCAAGGTGAATAATGCTTAAACTGTACTCTCA[C/G]
TTCCCGAAATAAACCAATCTCGTACTAGGATATGTCAGGATCATTTGAAAATTGAAATAATTATTGAACTAACTGTCTGAGAATTCACCGCACATTCAGG

Allele Frequencies:

Allele Effect: