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Detailed information for vg0421623775:

Variant ID: vg0421623775 (JBrowse)Variation Type: SNP
Chromosome: chr04Position: 21623775
Reference Allele: TAlternative Allele: A,G
Primary Allele: TSecondary Allele: A

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 0.99, G: 0.00, others allele: 0.00, population size: 322. )

Flanking Sequence (100 bp) in Reference Genome:


CCTCTGCGTATTTTTCTGCATAGACCTGAATGTGCGGTGAATTCTCAGACAGTTAGTTCAATAATTATTTCAATTTTCAAATGATCCTGACATATCCTAG[T/A,G]
ACGAGATTGGTTTATTTCGGGAAGTGAGAGTACAGTTTAAGCATTATTCACCTTGAATGTTGGGTCCTCAAATAATGCAGCATCTGTAGGCAAGACCAGG

Reverse complement sequence

CCTGGTCTTGCCTACAGATGCTGCATTATTTGAGGACCCAACATTCAAGGTGAATAATGCTTAAACTGTACTCTCACTTCCCGAAATAAACCAATCTCGT[A/T,C]
CTAGGATATGTCAGGATCATTTGAAAATTGAAATAATTATTGAACTAACTGTCTGAGAATTCACCGCACATTCAGGTCTATGCAGAAAAATACGCAGAGG

Allele Frequencies:

Allele Effect: