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Detailed information for vg0333189303:

Variant ID: vg0333189303 (JBrowse)	Variation Type: SNP
Chromosome: chr03	Position: 33189303
Reference Allele: T	Alternative Allele: A
Primary Allele: T	Secondary Allele: A

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 0.99, others allele: 0.00, population size: 368. )

Flanking Sequence (100 bp) in Reference Genome:

GCGATGCAATAGGAAACTGAAAGGCTACCGGATGAAAGTGGAAATCCAACTGAAAGGGCTAAGGTGAAAATAGGACACATGCATGCATGACGAGGTAGGT[T/A]
AATTATGTACAGAATCTATATTACAAGCAAGCAATGAATGATCACCTTCGTTGTAATCTTTGATCAGCAGGTCTTGCAGTTCCAGTGGTCTCAGCTTCTC

Reverse complement sequence

GAGAAGCTGAGACCACTGGAACTGCAAGACCTGCTGATCAAAGATTACAACGAAGGTGATCATTCATTGCTTGCTTGTAATATAGATTCTGTACATAATT[A/T]
ACCTACCTCGTCATGCATGCATGTGTCCTATTTTCACCTTAGCCCTTTCAGTTGGATTTCCACTTTCATCCGGTAGCCTTTCAGTTTCCTATTGCATCGC

Allele Frequencies:

Allele Effect: