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Detailed information for vg0333189040:

Variant ID: vg0333189040 (JBrowse)	Variation Type: SNP
Chromosome: chr03	Position: 33189040
Reference Allele: G	Alternative Allele: A
Primary Allele: G	Secondary Allele: A

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 1.00, others allele: 0.00, population size: 336. )

Flanking Sequence (100 bp) in Reference Genome:

TCTCTAGGGAGTATAACTTTGATTTGCAAATCCAAGATGGGGGTGCATCAACCAGATACTAGATACAATCGGTTTCAGAAACTTGTGACATAAGGAATAT[G/A]
ATGTGAACTCAGATTTAATTCATCCCAAATTGCTTATGTCAATAAACAAGTAGAGAGCAAAGTGCTACGTGTAATGGCCATACAAATTCCTCTCTTGCTC

Reverse complement sequence

GAGCAAGAGAGGAATTTGTATGGCCATTACACGTAGCACTTTGCTCTCTACTTGTTTATTGACATAAGCAATTTGGGATGAATTAAATCTGAGTTCACAT[C/T]
ATATTCCTTATGTCACAAGTTTCTGAAACCGATTGTATCTAGTATCTGGTTGATGCACCCCCATCTTGGATTTGCAAATCAAAGTTATACTCCCTAGAGA

Allele Frequencies:

Allele Effect: