Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Detailed information for vg0333189007:

Variant ID: vg0333189007 (JBrowse)Variation Type: SNP
Chromosome: chr03Position: 33189007
Reference Allele: AAlternative Allele: G
Primary Allele: ASecondary Allele: G

Inferred Ancestral Allele : A (evidence from allele frequency in Oryza rufipogon: A: 1.00, others allele: 0.00, population size: 331. )

Flanking Sequence (100 bp) in Reference Genome:


TTATTGGGGTAATTGCTTTATGAAAGGTAAAGCTCTCTAGGGAGTATAACTTTGATTTGCAAATCCAAGATGGGGGTGCATCAACCAGATACTAGATACA[A/G]
TCGGTTTCAGAAACTTGTGACATAAGGAATATGATGTGAACTCAGATTTAATTCATCCCAAATTGCTTATGTCAATAAACAAGTAGAGAGCAAAGTGCTA

Reverse complement sequence

TAGCACTTTGCTCTCTACTTGTTTATTGACATAAGCAATTTGGGATGAATTAAATCTGAGTTCACATCATATTCCTTATGTCACAAGTTTCTGAAACCGA[T/C]
TGTATCTAGTATCTGGTTGATGCACCCCCATCTTGGATTTGCAAATCAAAGTTATACTCCCTAGAGAGCTTTACCTTTCATAAAGCAATTACCCCAATAA

Allele Frequencies:

Allele Effect: