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Detailed information for vg0333188610:

Variant ID: vg0333188610 (JBrowse)	Variation Type: SNP
Chromosome: chr03	Position: 33188610
Reference Allele: T	Alternative Allele: C
Primary Allele: T	Secondary Allele: C

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 1.00, others allele: 0.00, population size: 331. )

Flanking Sequence (100 bp) in Reference Genome:

CTTGAGCGCCTGGCTGACTCCCGATTGGATTGCTTCCTGGAACAGGTCAACAAAACTAGCATTATATCGAGAAGTGCTTGCTCAACATCTTCATACAAAA[T/C]
CACCCAAAAGAACAGCCTATATTATTGTCTAGCACAAGTAACATAATAAACAATACAAGGTATAATGCAATCCACCATATCATCACGTGACGTTTGAATA

Reverse complement sequence

TATTCAAACGTCACGTGATGATATGGTGGATTGCATTATACCTTGTATTGTTTATTATGTTACTTGTGCTAGACAATAATATAGGCTGTTCTTTTGGGTG[A/G]
TTTTGTATGAAGATGTTGAGCAAGCACTTCTCGATATAATGCTAGTTTTGTTGACCTGTTCCAGGAAGCAATCCAATCGGGAGTCAGCCAGGCGCTCAAG

Allele Frequencies:

Allele Effect: