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Detailed information for vg0333188403:

Variant ID: vg0333188403 (JBrowse)	Variation Type: SNP
Chromosome: chr03	Position: 33188403
Reference Allele: C	Alternative Allele: A
Primary Allele: C	Secondary Allele: A

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 1.00, others allele: 0.00, population size: 313. )

Flanking Sequence (100 bp) in Reference Genome:

CAGCAGCATCATTGTACTTCTGGTTAACATCAGCAAGACGCCTTAACAGCGAGGAGTTCTCGACTCTTAATTGCGATACCTGTAACAAGTAAATCCATAA[C/A]
TGAAGTCAGTAGCCAGTAATTTAGGATTTTATGTCTTATCGAAAATAACTATGTGAACTATCAGACCTGTGCCTCCAGCTCATTCAAGTGAGCTGCCTTT

Reverse complement sequence

AAAGGCAGCTCACTTGAATGAGCTGGAGGCACAGGTCTGATAGTTCACATAGTTATTTTCGATAAGACATAAAATCCTAAATTACTGGCTACTGACTTCA[G/T]
TTATGGATTTACTTGTTACAGGTATCGCAATTAAGAGTCGAGAACTCCTCGCTGTTAAGGCGTCTTGCTGATGTTAACCAGAAGTACAATGATGCTGCTG

Allele Frequencies:

Allele Effect: