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Detailed information for vg0332251396:

Variant ID: vg0332251396 (JBrowse)	Variation Type: SNP
Chromosome: chr03	Position: 32251396
Reference Allele: T	Alternative Allele: C
Primary Allele: C	Secondary Allele: T

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 0.99, C: 0.01, others allele: 0.00, population size: 295. )

Flanking Sequence (100 bp) in Reference Genome:

AAGGTCAGTGACTCACATTCTGTATTGGGCAACATCCACCATTGCCAGATCACCATGCACTCAAACTCATTCAAATAGCGCACTGTTTGTCTGTGGACTT[T/C]
CCATTTTTCAGGGATCAAATTAGGTTGGCAATAACATTGGCCTTGTATGACAATTATCTGAAGCTCCCTTCCAATTGGAAGCGCGCAGATGCTAACTCAG

Reverse complement sequence

CTGAGTTAGCATCTGCGCGCTTCCAATTGGAAGGGAGCTTCAGATAATTGTCATACAAGGCCAATGTTATTGCCAACCTAATTTGATCCCTGAAAAATGG[A/G]
AAGTCCACAGACAAACAGTGCGCTATTTGAATGAGTTTGAGTGCATGGTGATCTGGCAATGGTGGATGTTGCCCAATACAGAATGTGAGTCACTGACCTT

Allele Frequencies:

Allele Effect: