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Detailed information for vg0234906338:

Variant ID: vg0234906338 (JBrowse)	Variation Type: SNP
Chromosome: chr02	Position: 34906338
Reference Allele: C	Alternative Allele: T
Primary Allele: C	Secondary Allele: T

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 1.00, others allele: 0.00, population size: 254. )

Flanking Sequence (100 bp) in Reference Genome:

ATAGAACAAGTCCCGCCTATTACAGTGATTCCCAAAGAAACACACTGAAGGATAGAAGGAAACAGAACAACAAAAAAGAAAATCTTAGAGAGAAATCAGA[C/T]
AAAAGATTACAGAAATGAGTAATTTGATTTGAATTCTGTGTTGCTAAATCTAAATGGTTAATTGAACTTTGTGAAGCTACTTACCAGCCTATTCCCAGAA

Reverse complement sequence

TTCTGGGAATAGGCTGGTAAGTAGCTTCACAAAGTTCAATTAACCATTTAGATTTAGCAACACAGAATTCAAATCAAATTACTCATTTCTGTAATCTTTT[G/A]
TCTGATTTCTCTCTAAGATTTTCTTTTTTGTTGTTCTGTTTCCTTCTATCCTTCAGTGTGTTTCTTTGGGAATCACTGTAATAGGCGGGACTTGTTCTAT

Allele Frequencies:

Allele Effect: