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Detailed information for vg0234906123:

Variant ID: vg0234906123 (JBrowse)	Variation Type: INDEL
Chromosome: chr02	Position: 34906123
Reference Allele: C	Alternative Allele: CA
Primary Allele: C	Secondary Allele: CA

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 1.01, others allele: 0.00, population size: 254. )

Flanking Sequence (100 bp) in Reference Genome:

AGTATGCTGCTATACATCTTAGCAAAGAAAATTGTAATTGGACCAAAATATACTGATGTGAAGAGTGAATAGAGGGTAAAGAGAAGTATATTTGAAGAAG[C/CA]
AAAAAAAAAGAGGGGCGGGGAGGGGCACGATTGAGGCATGAATGGAACATAATTTTGCAGAATTAAACCACTGCTCAAACAGAAACAAAGAAAATGAATG

Reverse complement sequence

CATTCATTTTCTTTGTTTCTGTTTGAGCAGTGGTTTAATTCTGCAAAATTATGTTCCATTCATGCCTCAATCGTGCCCCTCCCCGCCCCTCTTTTTTTTT[G/TG]
CTTCTTCAAATATACTTCTCTTTACCCTCTATTCACTCTTCACATCAGTATATTTTGGTCCAATTACAATTTTCTTTGCTAAGATGTATAGCAGCATACT

Allele Frequencies:

Allele Effect: