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Detailed information for vg0213362930:

Variant ID: vg0213362930 (JBrowse)Variation Type: SNP
Chromosome: chr02Position: 13362930
Reference Allele: AAlternative Allele: T
Primary Allele: ASecondary Allele: T

Inferred Ancestral Allele : A (evidence from allele frequency in Oryza rufipogon: A: 1.00, others allele: 0.00, population size: 300. )

Flanking Sequence (100 bp) in Reference Genome:


AGCATACCTCATCCAAGCTTGCTATCTTCTTTAACTCGAGAGCACTTAAATTAGTGGTATTCCCTACGGTGTTTGCCAGTAAATTAGAATTAGTTAACTC[A/T]
AACAGTACATGATATATAGTGAAGAAATCACAAGCTTAAAAGCTGTTACATACCATCGATCTGTATAAATTAATTTCAGAGATATACAATTAGCAATTAA

Reverse complement sequence

TTAATTGCTAATTGTATATCTCTGAAATTAATTTATACAGATCGATGGTATGTAACAGCTTTTAAGCTTGTGATTTCTTCACTATATATCATGTACTGTT[T/A]
GAGTTAACTAATTCTAATTTACTGGCAAACACCGTAGGGAATACCACTAATTTAAGTGCTCTCGAGTTAAAGAAGATAGCAAGCTTGGATGAGGTATGCT

Allele Frequencies:

Allele Effect: