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Detailed information for vg0213362869:

Variant ID: vg0213362869 (JBrowse)	Variation Type: SNP
Chromosome: chr02	Position: 13362869
Reference Allele: G	Alternative Allele: T
Primary Allele: G	Secondary Allele: T

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 0.99, T: 0.01, others allele: 0.00, population size: 281. )

Flanking Sequence (100 bp) in Reference Genome:

TCCGCTGCTTGTACTCATGGTTCTGTTGAACCTTAGCTTGCTACTGCTTACAATTGAGCAAAGCATACCTCATCCAAGCTTGCTATCTTCTTTAACTCGA[G/T]
AGCACTTAAATTAGTGGTATTCCCTACGGTGTTTGCCAGTAAATTAGAATTAGTTAACTCAAACAGTACATGATATATAGTGAAGAAATCACAAGCTTAA

Reverse complement sequence

TTAAGCTTGTGATTTCTTCACTATATATCATGTACTGTTTGAGTTAACTAATTCTAATTTACTGGCAAACACCGTAGGGAATACCACTAATTTAAGTGCT[C/A]
TCGAGTTAAAGAAGATAGCAAGCTTGGATGAGGTATGCTTTGCTCAATTGTAAGCAGTAGCAAGCTAAGGTTCAACAGAACCATGAGTACAAGCAGCGGA

Allele Frequencies:

Allele Effect: