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Detailed information for vg0213362589:

Variant ID: vg0213362589 (JBrowse)	Variation Type: INDEL
Chromosome: chr02	Position: 13362589
Reference Allele: T	Alternative Allele: TC
Primary Allele: T	Secondary Allele: TC

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 1.01, others allele: 0.00, population size: 254. )

Flanking Sequence (100 bp) in Reference Genome:

TTTTTTCATGTTTTTGTGAATTTGGTCAAAGTTTATTCTAAATCATTCAAAATTCGTCAATTTTTCAAATAAATTCAGTGATTTTGGTTCTTTCGCCCCC[T/TC]
CCCCCCACGGAAAAAACCCCAATTTCTAGAATGCAAACCCTGAATATTGCAGTAAAACTACAGTGAAATACTTGGTGCACAAATGTCATTACGGGTGGCA

Reverse complement sequence

TGCCACCCGTAATGACATTTGTGCACCAAGTATTTCACTGTAGTTTTACTGCAATATTCAGGGTTTGCATTCTAGAAATTGGGGTTTTTTCCGTGGGGGG[A/GA]
GGGGGCGAAAGAACCAAAATCACTGAATTTATTTGAAAAATTGACGAATTTTGAATGATTTAGAATAAACTTTGACCAAATTCACAAAAACATGAAAAAA

Allele Frequencies:

Allele Effect: