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Detailed information for vg0213362227:

Variant ID: vg0213362227 (JBrowse)	Variation Type: SNP
Chromosome: chr02	Position: 13362227
Reference Allele: T	Alternative Allele: C
Primary Allele: T	Secondary Allele: C

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 1.00, others allele: 0.00, population size: 254. )

Flanking Sequence (100 bp) in Reference Genome:

GTCCTGAGCTCCAAAATTGATCATTGGTATATACAAAGGGGATATTCACTTATATTTAAGTCTGCTAGAATAAAACTCTCTTGACCTATGGAGTTATATG[T/C]
GCATACATACAAACTGAAAGAGACGCTTACATTTAAGCTTGAGGACATTTCAACCTGATAGGCTCATGTCAAACCAACCGTTGAAACAATTCCGAAATTA

Reverse complement sequence

TAATTTCGGAATTGTTTCAACGGTTGGTTTGACATGAGCCTATCAGGTTGAAATGTCCTCAAGCTTAAATGTAAGCGTCTCTTTCAGTTTGTATGTATGC[A/G]
CATATAACTCCATAGGTCAAGAGAGTTTTATTCTAGCAGACTTAAATATAAGTGAATATCCCCTTTGTATATACCAATGATCAATTTTGGAGCTCAGGAC

Allele Frequencies:

Allele Effect: