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Detailed information for vg0213361570:

Variant ID: vg0213361570 (JBrowse)	Variation Type: SNP
Chromosome: chr02	Position: 13361570
Reference Allele: C	Alternative Allele: T
Primary Allele: C	Secondary Allele: T

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 0.99, T: 0.01, others allele: 0.00, population size: 263. )

Flanking Sequence (100 bp) in Reference Genome:

GGTCATATTGCTAAACTATGCACACACCTGCAGTTGAAGTGGCAGCCACGAAAGGATCTACCAATCTTAAAATCTGGAGACCAATATCTTTCATGGAATT[C/T]
CCTCAAGGAAAGGGTTCCACTATTAGACTGGAAAAAGGGAAACATATCAAATCATGAAAAAGGCATAATCTGAAATTGGAATAGCGTATATCTTTTTAAG

Reverse complement sequence

CTTAAAAAGATATACGCTATTCCAATTTCAGATTATGCCTTTTTCATGATTTGATATGTTTCCCTTTTTCCAGTCTAATAGTGGAACCCTTTCCTTGAGG[G/A]
AATTCCATGAAAGATATTGGTCTCCAGATTTTAAGATTGGTAGATCCTTTCGTGGCTGCCACTTCAACTGCAGGTGTGTGCATAGTTTAGCAATATGACC

Allele Frequencies:

Allele Effect: