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Detailed information for vg0213361517:

Variant ID: vg0213361517 (JBrowse)	Variation Type: SNP
Chromosome: chr02	Position: 13361517
Reference Allele: A	Alternative Allele: T
Primary Allele: T	Secondary Allele: A

Inferred Ancestral Allele : A (evidence from allele frequency in Oryza rufipogon: A: 1.00, T: 0.01, others allele: 0.00, population size: 236. )

Flanking Sequence (100 bp) in Reference Genome:

ACATTTGTCAAAACGCCTCTATATTTTCCTTGACCACAATATTAATCTAAAGTGGTCATATTGCTAAACTATGCACACACCTGCAGTTGAAGTGGCAGCC[A/T]
CGAAAGGATCTACCAATCTTAAAATCTGGAGACCAATATCTTTCATGGAATTCCCTCAAGGAAAGGGTTCCACTATTAGACTGGAAAAAGGGAAACATAT

Reverse complement sequence

ATATGTTTCCCTTTTTCCAGTCTAATAGTGGAACCCTTTCCTTGAGGGAATTCCATGAAAGATATTGGTCTCCAGATTTTAAGATTGGTAGATCCTTTCG[T/A]
GGCTGCCACTTCAACTGCAGGTGTGTGCATAGTTTAGCAATATGACCACTTTAGATTAATATTGTGGTCAAGGAAAATATAGAGGCGTTTTGACAAATGT

Allele Frequencies:

Allele Effect: