CATTGAAGGAGAGCTTGAGCTCCAGCAATGCCTGCCCTGCAAGGAGCAGAAAAAACACAACTACCCCGGTGAGACAGCCAGATTGGAGGAAGCGTTCTCT[CATCCATCCATCC/CATCCATCC,CATCCATCCATCCATCC]
ATCCATCCATGGATGCGTAGTGCAGCGCAGAGAGAGAGAGGGTACCGTCCGGGGTGAGGGCCATGGAGGTGGAGCAGAGCAGTGAGGCAGCCATGGCGGT
ACCGCCATGGCTGCCTCACTGCTCTGCTCCACCTCCATGGCCCTCACCCCGGACGGTACCCTCTCTCTCTCTGCGCTGCACTACGCATCCATGGATGGAT[GGATGGATGGATG/GGATGGATG,GGATGGATGGATGGATG]
AGAGAACGCTTCCTCCAATCTGGCTGTCTCACCGGGGTAGTTGTGTTTTTTCTGCTCCTTGCAGGGCAGGCATTGCTGGAGCTCAAGCTCTCCTTCAATG
| Populations | Population Size | Frequency of CATCCATCC(primary allele) | Frequency of CATCCATCCATCCATCC(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 43.00% | 17.20% | 7.36% | 0.00% | NA |
| All Indica | 492 | 65.70% | 0.00% | 8.13% | 0.00% | NA; CATCCATCCATCC: 2.40% |
| All Japonica | 244 | 0.40% | 0.00% | 5.33% | 0.00% | NA; CATCCATCC: 93.00% |
| Aus | 7 | 0.00% | 0.00% | 14.29% | 0.00% | NA; CATCCATCCATCC: 0.00%; CATCCATCCATCC: 85.70% |
| Indica I | 492 | 65.70% | 0.00% | 8.13% | 0.00% | NA; CATCCATCCATCC: 2.40% |
| Indica II | 215 | 70.70% | 0.00% | 5.58% | 0.00% | NA; CATCCATCCATCC: 2.00% |
| Indica III | 21 | 0.00% | 42.90% | 9.52% | 0.00% | NA; CATCCATCCATCC: 10.50% |
| Indica Intermediate | 190 | 55.80% | 0.00% | 10.00% | 0.00% | NA; CATCCATCCATCC: 3.50% |
| Temperate Japonica | 189 | 0.00% | 1.10% | 6.35% | 0.00% | NA; CATCCATCCATCCATCC: 92.60% |
| Tropical Japonica | 36 | 0.00% | 0.00% | 2.78% | 0.00% | NA; CATCCATCCATCC: 0.00%; CATCCATCCATCC: 97.20% |
| Japonica Intermediate | 19 | 5.30% | 0.00% | 0.00% | 0.00% | NA; CATCCATCC: 89.50% |
| VI/Aromatic | 9 | 22.20% | 0.00% | 0.00% | 0.00% | NA; CATCCATCC: 77.80% |
| Intermediate | 231 | 49.40% | 0.00% | 9.52% | 0.00% | NA; CATCCATCCATCC: 15.80% |