TCAGGGTATTTTGCTAAGAACCTACAAGATTGTGAGGTGAATGAGCTCGCCAATCTCTGAAGGGATGCCTCCTTGTAGGTAGTTGGCTCTCAAGTAACTG[CACACACACA/CACACACACACA]
GAGTAAATTAAACCTCCGCATTTCAGCTCTACAAAGTCATTAGCAGACAGATGGAGATGGAACCAAACAAGTACTAGATCGTAGCAGCATACATACATCG
CGATGTATGTATGCTGCTACGATCTAGTACTTGTTTGGTTCCATCTCCATCTGTCTGCTAATGACTTTGTAGAGCTGAAATGCGGAGGTTTAATTTACTC[TGTGTGTGTG/TGTGTGTGTGTG]
CAGTTACTTGAGAGCCAACTACCTACAAGGAGGCATCCCTTCAGAGATTGGCGAGCTCATTCACCTCACAATCTTGTAGGTTCTTAGCAAAATACCCTGA
| Populations | Population Size | Frequency of CACACACACACA(primary allele) | Frequency of CACACACACA(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 65.00% | 32.10% | 4.26% | 0.00% | NA |
| All Indica | 492 | 94.30% | 1.30% | 4.47% | 0.00% | NA |
| All Japonica | 244 | 8.10% | 88.90% | 3.28% | 0.00% | NA |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 94.30% | 1.30% | 4.47% | 0.00% | NA |
| Indica II | 215 | 93.00% | 1.50% | 5.58% | 0.00% | NA |
| Indica III | 21 | 90.50% | 9.50% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 94.70% | 1.60% | 3.68% | 0.00% | NA |
| Temperate Japonica | 189 | 8.80% | 87.30% | 4.23% | 0.00% | NA |
| Tropical Japonica | 36 | 2.80% | 97.20% | 0.00% | 0.00% | NA |
| Japonica Intermediate | 19 | 10.50% | 89.50% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 22.20% | 77.80% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 83.50% | 12.70% | 4.33% | 0.00% | NA |